ENSCAPP00000004335 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSCAPP00000004335

annotation not available (566 aa)

Predicted Functional Partners:

ENSCAPP00000016201

0.879

DSG4

0.833

KRT15

0.817

DSG1

0.771

KRT17

0.760

DSG3

0.754

DSG2

0.708

ENSCAPP00000002343

0.676

ENSCAPP00000008125

0.676

KRT5

0.673

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DSG1	DSG2	ENSCAPP00000004744	ENSCAPP00000010437	Desmoglein 1.	Desmoglein 2.	0.917
DSG1	DSG3	ENSCAPP00000004744	ENSCAPP00000004639	Desmoglein 1.	Desmoglein 3.	0.919
DSG1	DSG4	ENSCAPP00000004744	ENSCAPP00000004049	Desmoglein 1.	Desmoglein 4.	0.912
DSG1	ENSCAPP00000004335	ENSCAPP00000004744	ENSCAPP00000004335	Desmoglein 1.	annotation not available	0.771
DSG1	ENSCAPP00000016201	ENSCAPP00000004744	ENSCAPP00000016201	Desmoglein 1.	annotation not available	0.520
DSG1	KRT5	ENSCAPP00000004744	ENSCAPP00000009240	Desmoglein 1.	Keratin 5.	0.819
DSG2	DSG1	ENSCAPP00000010437	ENSCAPP00000004744	Desmoglein 2.	Desmoglein 1.	0.917
DSG2	DSG3	ENSCAPP00000010437	ENSCAPP00000004639	Desmoglein 2.	Desmoglein 3.	0.912
DSG2	DSG4	ENSCAPP00000010437	ENSCAPP00000004049	Desmoglein 2.	Desmoglein 4.	0.912
DSG2	ENSCAPP00000004335	ENSCAPP00000010437	ENSCAPP00000004335	Desmoglein 2.	annotation not available	0.708
DSG2	KRT5	ENSCAPP00000010437	ENSCAPP00000009240	Desmoglein 2.	Keratin 5.	0.709
DSG3	DSG1	ENSCAPP00000004639	ENSCAPP00000004744	Desmoglein 3.	Desmoglein 1.	0.919
DSG3	DSG2	ENSCAPP00000004639	ENSCAPP00000010437	Desmoglein 3.	Desmoglein 2.	0.912
DSG3	DSG4	ENSCAPP00000004639	ENSCAPP00000004049	Desmoglein 3.	Desmoglein 4.	0.912
DSG3	ENSCAPP00000004335	ENSCAPP00000004639	ENSCAPP00000004335	Desmoglein 3.	annotation not available	0.754
DSG3	KRT5	ENSCAPP00000004639	ENSCAPP00000009240	Desmoglein 3.	Keratin 5.	0.790
DSG4	DSG1	ENSCAPP00000004049	ENSCAPP00000004744	Desmoglein 4.	Desmoglein 1.	0.912
DSG4	DSG2	ENSCAPP00000004049	ENSCAPP00000010437	Desmoglein 4.	Desmoglein 2.	0.912
DSG4	DSG3	ENSCAPP00000004049	ENSCAPP00000004639	Desmoglein 4.	Desmoglein 3.	0.912
DSG4	ENSCAPP00000004335	ENSCAPP00000004049	ENSCAPP00000004335	Desmoglein 4.	annotation not available	0.833