MACROH2A2 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

MACROH2A2

macroH2A.2 histone. (372 aa)

Predicted Functional Partners:

MACROH2A1

0.977

H2AZ2

0.977

ENSCAPP00000001550

0.968

MYSM1

0.968

HDAC3

0.959

HDAC1

0.959

HDAC2

0.959

ENSCAPP00000001855

0.947

ENSCAPP00000006251

0.947

ENSCAPP00000009359

0.947

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000001550	ENSCAPP00000001855	ENSCAPP00000001550	ENSCAPP00000001855	annotation not available	annotation not available	0.994
ENSCAPP00000001550	ENSCAPP00000006251	ENSCAPP00000001550	ENSCAPP00000006251	annotation not available	annotation not available	0.996
ENSCAPP00000001550	ENSCAPP00000009359	ENSCAPP00000001550	ENSCAPP00000009359	annotation not available	annotation not available	0.985
ENSCAPP00000001550	H2AZ2	ENSCAPP00000001550	ENSCAPP00000015311	annotation not available	H2A.Z variant histone 2.	0.984
ENSCAPP00000001550	HDAC1	ENSCAPP00000001550	ENSCAPP00000015327	annotation not available	Histone deacetylase 1.	0.945
ENSCAPP00000001550	HDAC2	ENSCAPP00000001550	ENSCAPP00000016491	annotation not available	Histone deacetylase 2.	0.928
ENSCAPP00000001550	HDAC3	ENSCAPP00000001550	ENSCAPP00000010620	annotation not available	Histone deacetylase 3.	0.920
ENSCAPP00000001550	MACROH2A1	ENSCAPP00000001550	ENSCAPP00000014257	annotation not available	macroH2A.1 histone.	0.968
ENSCAPP00000001550	MACROH2A2	ENSCAPP00000001550	ENSCAPP00000004347	annotation not available	macroH2A.2 histone.	0.968
ENSCAPP00000001550	MYSM1	ENSCAPP00000001550	ENSCAPP00000004064	annotation not available	Myb like, SWIRM and MPN domains 1.	0.945
ENSCAPP00000001855	ENSCAPP00000001550	ENSCAPP00000001855	ENSCAPP00000001550	annotation not available	annotation not available	0.994
ENSCAPP00000001855	ENSCAPP00000006251	ENSCAPP00000001855	ENSCAPP00000006251	annotation not available	annotation not available	0.896
ENSCAPP00000001855	H2AZ2	ENSCAPP00000001855	ENSCAPP00000015311	annotation not available	H2A.Z variant histone 2.	0.863
ENSCAPP00000001855	HDAC1	ENSCAPP00000001855	ENSCAPP00000015327	annotation not available	Histone deacetylase 1.	0.894
ENSCAPP00000001855	HDAC2	ENSCAPP00000001855	ENSCAPP00000016491	annotation not available	Histone deacetylase 2.	0.894
ENSCAPP00000001855	HDAC3	ENSCAPP00000001855	ENSCAPP00000010620	annotation not available	Histone deacetylase 3.	0.894
ENSCAPP00000001855	MACROH2A1	ENSCAPP00000001855	ENSCAPP00000014257	annotation not available	macroH2A.1 histone.	0.947
ENSCAPP00000001855	MACROH2A2	ENSCAPP00000001855	ENSCAPP00000004347	annotation not available	macroH2A.2 histone.	0.947
ENSCAPP00000001855	MYSM1	ENSCAPP00000001855	ENSCAPP00000004064	annotation not available	Myb like, SWIRM and MPN domains 1.	0.527
ENSCAPP00000006251	ENSCAPP00000001550	ENSCAPP00000006251	ENSCAPP00000001550	annotation not available	annotation not available	0.996