Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000004348annotation not available (407 aa)    
Predicted Functional Partners:
MYSM1
Myb like, SWIRM and MPN domains 1.
    
  0.556
GART
annotation not available
     
  0.505
AK1
Adenylate kinase 1.
   
 
 0.495
BARD1
BRCA1 associated RING domain 1.
    
 0.484
SPOPL
Speckle type BTB/POZ protein like.
   
  0.453
SPOP
Speckle type BTB/POZ protein.
   
  0.453
ATM
ATM serine/threonine kinase.
    
 0.450
EZH1
Enhancer of zeste 1 polycomb repressive complex 2 subunit.
   
  0.449
EZH2
Enhancer of zeste 2 polycomb repressive complex 2 subunit.
   
  0.449
SUZ12
SUZ12 polycomb repressive complex 2 subunit.
    
 0.440
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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