Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEMA3BSemaphorin 3B. (738 aa)    
Predicted Functional Partners:
NRP1
Neuropilin 1.
    
 0.997
PLXNA4
Plexin A4.
    
 0.956
PLXNA2
Plexin A2.
    
 0.946
PLXND1
Plexin D1.
    
 0.897
PLXNA3
Plexin A3.
    
 0.885
ENSCAPP00000008211
annotation not available
    
 0.883
NRP2
Neuropilin 2.
    
 0.868
PLXNA1
Plexin A1.
    
 0.866
PLXNB1
Plexin B1.
    
 0.838
SEMA3G
Semaphorin 3G.
    
   0.835
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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