STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LRMPLymphoid restricted membrane protein. (432 aa)    
Predicted Functional Partners:
SUN1
Sad1 and UNC84 domain containing 1.
    
 0.993
SUN2
Sad1 and UNC84 domain containing 2.
    
 0.980
CCDC155
Coiled-coil domain containing 155.
 
   
 0.944
SYNE3
Spectrin repeat containing nuclear envelope family member 3.
    
 0.871
SUN3
Sad1 and UNC84 domain containing 3.
    
 0.845
CLMN
Calmin.
    
  0.840
ENSCAPP00000015390
annotation not available
    
 0.699
SUN5
Sad1 and UNC84 domain containing 5.
    
 0.687
PRKG1
Protein kinase cGMP-dependent 1.
    
 0.660
ENSCAPP00000007529
annotation not available
    
 0.660
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.