ENSCAPP00000004389 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSCAPP00000004389

annotation not available (106 aa)

Predicted Functional Partners:

MRPS2

0.998

ENSCAPP00000003097

0.998

ENSCAPP00000010846

0.998

MRPS16

0.998

MRPS22

0.998

MRPS18B

0.997

MRPS6

0.997

ENSCAPP00000006634

0.997

MRPS11

0.997

ENSCAPP00000013732

0.997

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000003097	ENSCAPP00000004389	ENSCAPP00000003097	ENSCAPP00000004389	annotation not available	annotation not available	0.998
ENSCAPP00000003097	ENSCAPP00000006634	ENSCAPP00000003097	ENSCAPP00000006634	annotation not available	annotation not available	0.996
ENSCAPP00000003097	ENSCAPP00000010846	ENSCAPP00000003097	ENSCAPP00000010846	annotation not available	annotation not available	0.998
ENSCAPP00000003097	ENSCAPP00000013732	ENSCAPP00000003097	ENSCAPP00000013732	annotation not available	annotation not available	0.998
ENSCAPP00000003097	MRPS11	ENSCAPP00000003097	ENSCAPP00000011012	annotation not available	Mitochondrial ribosomal protein S11.	0.998
ENSCAPP00000003097	MRPS16	ENSCAPP00000003097	ENSCAPP00000014749	annotation not available	Mitochondrial ribosomal protein S16.	0.998
ENSCAPP00000003097	MRPS18B	ENSCAPP00000003097	ENSCAPP00000000117	annotation not available	Mitochondrial ribosomal protein S18B.	0.997
ENSCAPP00000003097	MRPS2	ENSCAPP00000003097	ENSCAPP00000000615	annotation not available	Mitochondrial ribosomal protein S2.	0.998
ENSCAPP00000003097	MRPS22	ENSCAPP00000003097	ENSCAPP00000017105	annotation not available	Mitochondrial ribosomal protein S22.	0.998
ENSCAPP00000003097	MRPS6	ENSCAPP00000003097	ENSCAPP00000001532	annotation not available	Mitochondrial ribosomal protein S6.	0.998
ENSCAPP00000004389	ENSCAPP00000003097	ENSCAPP00000004389	ENSCAPP00000003097	annotation not available	annotation not available	0.998
ENSCAPP00000004389	ENSCAPP00000006634	ENSCAPP00000004389	ENSCAPP00000006634	annotation not available	annotation not available	0.997
ENSCAPP00000004389	ENSCAPP00000010846	ENSCAPP00000004389	ENSCAPP00000010846	annotation not available	annotation not available	0.998
ENSCAPP00000004389	ENSCAPP00000013732	ENSCAPP00000004389	ENSCAPP00000013732	annotation not available	annotation not available	0.997
ENSCAPP00000004389	MRPS11	ENSCAPP00000004389	ENSCAPP00000011012	annotation not available	Mitochondrial ribosomal protein S11.	0.997
ENSCAPP00000004389	MRPS16	ENSCAPP00000004389	ENSCAPP00000014749	annotation not available	Mitochondrial ribosomal protein S16.	0.998
ENSCAPP00000004389	MRPS18B	ENSCAPP00000004389	ENSCAPP00000000117	annotation not available	Mitochondrial ribosomal protein S18B.	0.997
ENSCAPP00000004389	MRPS2	ENSCAPP00000004389	ENSCAPP00000000615	annotation not available	Mitochondrial ribosomal protein S2.	0.998
ENSCAPP00000004389	MRPS22	ENSCAPP00000004389	ENSCAPP00000017105	annotation not available	Mitochondrial ribosomal protein S22.	0.998
ENSCAPP00000004389	MRPS6	ENSCAPP00000004389	ENSCAPP00000001532	annotation not available	Mitochondrial ribosomal protein S6.	0.997