Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000004391annotation not available (371 aa)    
Predicted Functional Partners:
PRPF19
pre-mRNA processing factor 19.
   
 0.986
DHX38
DEAH-box helicase 38.
   
 0.984
CRNKL1
Crooked neck pre-mRNA splicing factor 1.
   
 0.983
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
    
 0.982
SYF2
SYF2 pre-mRNA splicing factor.
    
 0.982
XAB2
XPA binding protein 2.
   
 0.982
CDC5L
Cell division cycle 5 like.
   
 0.982
RBM22
RNA binding motif protein 22.
   
 0.981
ENSCAPP00000012207
annotation not available
   
 0.981
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
    
 0.981
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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