ENSCAPP00000004396 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Co-occurrence

Co-expression

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[Homology]

Score

ENSCAPP00000004396

annotation not available (219 aa)

Predicted Functional Partners:

NECTIN2

0.998

ITGAL

0.953

ENSCAPP00000006326

0.891

ITGB2

0.891

BARD1

0.844

ENSCAPP00000002614

0.831

RAG2

0.831

UBE2V1

0.831

ENSCAPP00000015940

0.812

ITGB7

0.796

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BARD1	ENSCAPP00000002614	ENSCAPP00000016499	ENSCAPP00000002614	BRCA1 associated RING domain 1.	annotation not available	0.499
BARD1	ENSCAPP00000004396	ENSCAPP00000016499	ENSCAPP00000004396	BRCA1 associated RING domain 1.	annotation not available	0.844
BARD1	UBE2V1	ENSCAPP00000016499	ENSCAPP00000018269	BRCA1 associated RING domain 1.	Ubiquitin conjugating enzyme E2 V1.	0.495
ENSCAPP00000002614	BARD1	ENSCAPP00000002614	ENSCAPP00000016499	annotation not available	BRCA1 associated RING domain 1.	0.499
ENSCAPP00000002614	ENSCAPP00000004396	ENSCAPP00000002614	ENSCAPP00000004396	annotation not available	annotation not available	0.831
ENSCAPP00000002614	UBE2V1	ENSCAPP00000002614	ENSCAPP00000018269	annotation not available	Ubiquitin conjugating enzyme E2 V1.	0.978
ENSCAPP00000004396	BARD1	ENSCAPP00000004396	ENSCAPP00000016499	annotation not available	BRCA1 associated RING domain 1.	0.844
ENSCAPP00000004396	ENSCAPP00000002614	ENSCAPP00000004396	ENSCAPP00000002614	annotation not available	annotation not available	0.831
ENSCAPP00000004396	ENSCAPP00000006326	ENSCAPP00000004396	ENSCAPP00000006326	annotation not available	annotation not available	0.891
ENSCAPP00000004396	ENSCAPP00000015940	ENSCAPP00000004396	ENSCAPP00000015940	annotation not available	annotation not available	0.812
ENSCAPP00000004396	ITGAL	ENSCAPP00000004396	ENSCAPP00000014751	annotation not available	Integrin subunit alpha L.	0.953
ENSCAPP00000004396	ITGB2	ENSCAPP00000004396	ENSCAPP00000012339	annotation not available	Integrin subunit beta 2.	0.891
ENSCAPP00000004396	ITGB7	ENSCAPP00000004396	ENSCAPP00000016816	annotation not available	Integrin subunit beta 7.	0.796
ENSCAPP00000004396	NECTIN2	ENSCAPP00000004396	ENSCAPP00000014597	annotation not available	Nectin cell adhesion molecule 2.	0.998
ENSCAPP00000004396	RAG2	ENSCAPP00000004396	ENSCAPP00000004867	annotation not available	Recombination activating 2.	0.831
ENSCAPP00000004396	UBE2V1	ENSCAPP00000004396	ENSCAPP00000018269	annotation not available	Ubiquitin conjugating enzyme E2 V1.	0.831
ENSCAPP00000006326	ENSCAPP00000004396	ENSCAPP00000006326	ENSCAPP00000004396	annotation not available	annotation not available	0.891
ENSCAPP00000006326	ITGAL	ENSCAPP00000006326	ENSCAPP00000014751	annotation not available	Integrin subunit alpha L.	0.998
ENSCAPP00000006326	ITGB7	ENSCAPP00000006326	ENSCAPP00000016816	annotation not available	Integrin subunit beta 7.	0.879
ENSCAPP00000015940	ENSCAPP00000004396	ENSCAPP00000015940	ENSCAPP00000004396	annotation not available	annotation not available	0.812