STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC88ACoiled-coil domain containing 88A. (1543 aa)    
Predicted Functional Partners:
GNAI3
G protein subunit alpha i3.
    
 
 0.864
ENSCAPP00000018460
annotation not available
   
    0.673
ENSCAPP00000011373
annotation not available
    
 
 0.645
FKTN
Fukutin.
      
 0.564
GNAI1
G protein subunit alpha i1.
    
 
 0.536
ENSCAPP00000014622
annotation not available
    
 
 0.536
RND1
Rho family GTPase 1.
    
  0.529
ENSCAPP00000006795
annotation not available
    
  0.529
GNAT3
G protein subunit alpha transducin 3.
    
 
 0.521
GNAT1
G protein subunit alpha transducin 1.
    
 
 0.521
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.