STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC88ACoiled-coil domain containing 88A. (1543 aa)    
Predicted Functional Partners:
GNAI3
G protein subunit alpha i3.
    
 
 0.915
AKT1
AKT serine/threonine kinase 1.
    
 
 0.859
DYNC1H1
Dynein cytoplasmic 1 heavy chain 1.
    
 
 0.816
ENSCAPP00000008774
annotation not available
    
   0.811
ENSCAPP00000011373
annotation not available
    
 
 0.797
EGFR
Epidermal growth factor receptor.
    
 
 0.703
BTBD7
BTB domain containing 7.
      
 0.569
PHYKPL
5-phosphohydroxy-L-lysine phospho-lyase.
      
 0.568
ENSCAPP00000015159
annotation not available
      
 0.568
ARSG
Arylsulfatase G.
      
 0.561
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.