STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TFAP4Transcription factor AP-4. (326 aa)    
Predicted Functional Partners:
CDKN1A
Cyclin dependent kinase inhibitor 1A.
     
 0.911
USF2
Upstream transcription factor 2, c-fos interacting.
    
 
 0.604
SCMH1
Scm polycomb group protein homolog 1.
      
 0.559
TAF6
TATA-box binding protein associated factor 6.
      
 0.559
BPTF
Bromodomain PHD finger transcription factor.
    
   0.556
L3MBTL2
L3MBTL histone methyl-lysine binding protein 2.
      
 0.537
CXXC1
CXXC finger protein 1.
      
 0.531
GMNN
Geminin DNA replication inhibitor.
    
 
 0.521
FBXW11
F-box and WD repeat domain containing 11.
    
   0.491
RBM4B
RNA binding motif protein 4B.
      
 0.441
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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