Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000004459annotation not available (815 aa)    
Predicted Functional Partners:
ENSCAPP00000017572
annotation not available
   
 0.859
NCBP1
Nuclear cap binding protein subunit 1.
    
 0.851
ENSCAPP00000017855
annotation not available
    
 0.834
U2AF2
U2 small nuclear RNA auxiliary factor 2.
   
 0.808
ENSCAPP00000015332
annotation not available
   
 0.808
SRRM1
Serine and arginine repetitive matrix 1.
   
 0.806
NXF1
Nuclear RNA export factor 1.
   
 0.804
ENSCAPP00000011839
annotation not available
   
 0.804
POLDIP3
DNA polymerase delta interacting protein 3.
   
 0.795
ENSCAPP00000014327
annotation not available
   
 0.795
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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