RPL10L protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RPL10L

Ribosomal protein L10 like. (214 aa)

Predicted Functional Partners:

ENSCAPP00000000576

0.996

ENSCAPP00000004781

0.996

RPL23

0.996

RPL8

0.995

ENSCAPP00000004779

0.995

RPL32

0.995

RPL5

0.995

ENSCAPP00000016878

0.995

ENSCAPP00000017536

0.995

ENSCAPP00000004658

0.994

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000000576	ENSCAPP00000004658	ENSCAPP00000000576	ENSCAPP00000004658	annotation not available	annotation not available	0.998
ENSCAPP00000000576	ENSCAPP00000004779	ENSCAPP00000000576	ENSCAPP00000004779	annotation not available	annotation not available	0.998
ENSCAPP00000000576	ENSCAPP00000004781	ENSCAPP00000000576	ENSCAPP00000004781	annotation not available	annotation not available	0.990
ENSCAPP00000000576	ENSCAPP00000016878	ENSCAPP00000000576	ENSCAPP00000016878	annotation not available	annotation not available	0.999
ENSCAPP00000000576	ENSCAPP00000017536	ENSCAPP00000000576	ENSCAPP00000017536	annotation not available	annotation not available	0.996
ENSCAPP00000000576	RPL10L	ENSCAPP00000000576	ENSCAPP00000004473	annotation not available	Ribosomal protein L10 like.	0.996
ENSCAPP00000000576	RPL23	ENSCAPP00000000576	ENSCAPP00000017030	annotation not available	Ribosomal protein L23.	0.999
ENSCAPP00000000576	RPL32	ENSCAPP00000000576	ENSCAPP00000010965	annotation not available	Ribosomal protein L32.	0.998
ENSCAPP00000000576	RPL5	ENSCAPP00000000576	ENSCAPP00000013511	annotation not available	Ribosomal protein L5.	0.998
ENSCAPP00000000576	RPL8	ENSCAPP00000000576	ENSCAPP00000003457	annotation not available	Ribosomal protein L8.	0.998
ENSCAPP00000004658	ENSCAPP00000000576	ENSCAPP00000004658	ENSCAPP00000000576	annotation not available	annotation not available	0.998
ENSCAPP00000004658	ENSCAPP00000004779	ENSCAPP00000004658	ENSCAPP00000004779	annotation not available	annotation not available	0.999
ENSCAPP00000004658	ENSCAPP00000004781	ENSCAPP00000004658	ENSCAPP00000004781	annotation not available	annotation not available	0.998
ENSCAPP00000004658	ENSCAPP00000016878	ENSCAPP00000004658	ENSCAPP00000016878	annotation not available	annotation not available	0.999
ENSCAPP00000004658	ENSCAPP00000017536	ENSCAPP00000004658	ENSCAPP00000017536	annotation not available	annotation not available	0.999
ENSCAPP00000004658	RPL10L	ENSCAPP00000004658	ENSCAPP00000004473	annotation not available	Ribosomal protein L10 like.	0.994
ENSCAPP00000004658	RPL23	ENSCAPP00000004658	ENSCAPP00000017030	annotation not available	Ribosomal protein L23.	0.999
ENSCAPP00000004658	RPL32	ENSCAPP00000004658	ENSCAPP00000010965	annotation not available	Ribosomal protein L32.	0.999
ENSCAPP00000004658	RPL5	ENSCAPP00000004658	ENSCAPP00000013511	annotation not available	Ribosomal protein L5.	0.999
ENSCAPP00000004658	RPL8	ENSCAPP00000004658	ENSCAPP00000003457	annotation not available	Ribosomal protein L8.	0.999