UBB protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

UBB

Ubiquitin B. (229 aa)

Predicted Functional Partners:

MYSM1

0.995

ENSCAPP00000002614

0.965

UBE2V1

0.965

TRIP12

0.959

ENSCAPP00000005006

0.945

TRAF7

0.941

ENSCAPP00000010366

0.936

UBA52

0.935

ENSCAPP00000002664

0.928

ENSCAPP00000017181

0.899

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000002614	ENSCAPP00000010366	ENSCAPP00000002614	ENSCAPP00000010366	annotation not available	annotation not available	0.999
ENSCAPP00000002614	MYSM1	ENSCAPP00000002614	ENSCAPP00000004064	annotation not available	Myb like, SWIRM and MPN domains 1.	0.532
ENSCAPP00000002614	TRAF7	ENSCAPP00000002614	ENSCAPP00000018018	annotation not available	TNF receptor associated factor 7.	0.792
ENSCAPP00000002614	TRIP12	ENSCAPP00000002614	ENSCAPP00000012593	annotation not available	Thyroid hormone receptor interactor 12.	0.498
ENSCAPP00000002614	UBA52	ENSCAPP00000002614	ENSCAPP00000005037	annotation not available	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.999
ENSCAPP00000002614	UBB	ENSCAPP00000002614	ENSCAPP00000004500	annotation not available	Ubiquitin B.	0.965
ENSCAPP00000002614	UBE2V1	ENSCAPP00000002614	ENSCAPP00000018269	annotation not available	Ubiquitin conjugating enzyme E2 V1.	0.990
ENSCAPP00000002664	ENSCAPP00000010366	ENSCAPP00000002664	ENSCAPP00000010366	annotation not available	annotation not available	0.976
ENSCAPP00000002664	ENSCAPP00000017181	ENSCAPP00000002664	ENSCAPP00000017181	annotation not available	annotation not available	0.988
ENSCAPP00000002664	MYSM1	ENSCAPP00000002664	ENSCAPP00000004064	annotation not available	Myb like, SWIRM and MPN domains 1.	0.537
ENSCAPP00000002664	TRAF7	ENSCAPP00000002664	ENSCAPP00000018018	annotation not available	TNF receptor associated factor 7.	0.604
ENSCAPP00000002664	TRIP12	ENSCAPP00000002664	ENSCAPP00000012593	annotation not available	Thyroid hormone receptor interactor 12.	0.587
ENSCAPP00000002664	UBA52	ENSCAPP00000002664	ENSCAPP00000005037	annotation not available	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.976
ENSCAPP00000002664	UBB	ENSCAPP00000002664	ENSCAPP00000004500	annotation not available	Ubiquitin B.	0.928
ENSCAPP00000005006	ENSCAPP00000010366	ENSCAPP00000005006	ENSCAPP00000010366	annotation not available	annotation not available	0.974
ENSCAPP00000005006	TRAF7	ENSCAPP00000005006	ENSCAPP00000018018	annotation not available	TNF receptor associated factor 7.	0.686
ENSCAPP00000005006	UBA52	ENSCAPP00000005006	ENSCAPP00000005037	annotation not available	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.974
ENSCAPP00000005006	UBB	ENSCAPP00000005006	ENSCAPP00000004500	annotation not available	Ubiquitin B.	0.945
ENSCAPP00000010366	ENSCAPP00000002614	ENSCAPP00000010366	ENSCAPP00000002614	annotation not available	annotation not available	0.999
ENSCAPP00000010366	ENSCAPP00000002664	ENSCAPP00000010366	ENSCAPP00000002664	annotation not available	annotation not available	0.976