PCDH19 protein (Cavia aperea) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

PCDH19

Protocadherin 19. (967 aa)

Predicted Functional Partners:

ENSCAPP00000005988

0.895

PCDH12

0.823

SCN1A

0.769

COQ6

0.698

STXBP1

0.680

UNC5B

0.678

KCNQ2

0.675

ENSCAPP00000008006

0.658

ITGA6

0.598

SPTAN1

0.591

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COQ6	PCDH19	ENSCAPP00000003855	ENSCAPP00000004514	Coenzyme Q6, monooxygenase.	Protocadherin 19.	0.698
ENSCAPP00000005988	PCDH12	ENSCAPP00000005988	ENSCAPP00000017670	annotation not available	Protocadherin 12.	0.935
ENSCAPP00000005988	PCDH19	ENSCAPP00000005988	ENSCAPP00000004514	annotation not available	Protocadherin 19.	0.895
ENSCAPP00000008006	KCNQ2	ENSCAPP00000008006	ENSCAPP00000011022	annotation not available	Potassium voltage-gated channel subfamily Q member 2.	0.577
ENSCAPP00000008006	PCDH19	ENSCAPP00000008006	ENSCAPP00000004514	annotation not available	Protocadherin 19.	0.658
ENSCAPP00000008006	SCN1A	ENSCAPP00000008006	ENSCAPP00000007991	annotation not available	Sodium voltage-gated channel alpha subunit 1.	0.581
ENSCAPP00000008006	SPTAN1	ENSCAPP00000008006	ENSCAPP00000003587	annotation not available	Spectrin alpha, non-erythrocytic 1.	0.584
ENSCAPP00000008006	STXBP1	ENSCAPP00000008006	ENSCAPP00000003604	annotation not available	Syntaxin binding protein 1.	0.579
ITGA6	PCDH19	ENSCAPP00000005244	ENSCAPP00000004514	Integrin subunit alpha 6.	Protocadherin 19.	0.598
ITGA6	UNC5B	ENSCAPP00000005244	ENSCAPP00000001263	Integrin subunit alpha 6.	Unc-5 netrin receptor B.	0.670
KCNQ2	ENSCAPP00000008006	ENSCAPP00000011022	ENSCAPP00000008006	Potassium voltage-gated channel subfamily Q member 2.	annotation not available	0.577
KCNQ2	PCDH19	ENSCAPP00000011022	ENSCAPP00000004514	Potassium voltage-gated channel subfamily Q member 2.	Protocadherin 19.	0.675
KCNQ2	SCN1A	ENSCAPP00000011022	ENSCAPP00000007991	Potassium voltage-gated channel subfamily Q member 2.	Sodium voltage-gated channel alpha subunit 1.	0.764
KCNQ2	SPTAN1	ENSCAPP00000011022	ENSCAPP00000003587	Potassium voltage-gated channel subfamily Q member 2.	Spectrin alpha, non-erythrocytic 1.	0.588
KCNQ2	STXBP1	ENSCAPP00000011022	ENSCAPP00000003604	Potassium voltage-gated channel subfamily Q member 2.	Syntaxin binding protein 1.	0.676
PCDH12	ENSCAPP00000005988	ENSCAPP00000017670	ENSCAPP00000005988	Protocadherin 12.	annotation not available	0.935
PCDH12	PCDH19	ENSCAPP00000017670	ENSCAPP00000004514	Protocadherin 12.	Protocadherin 19.	0.823
PCDH19	COQ6	ENSCAPP00000004514	ENSCAPP00000003855	Protocadherin 19.	Coenzyme Q6, monooxygenase.	0.698
PCDH19	ENSCAPP00000005988	ENSCAPP00000004514	ENSCAPP00000005988	Protocadherin 19.	annotation not available	0.895
PCDH19	ENSCAPP00000008006	ENSCAPP00000004514	ENSCAPP00000008006	Protocadherin 19.	annotation not available	0.658