Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRIM50Tripartite motif containing 50. (490 aa)    
Predicted Functional Partners:
CAV3
Caveolin 3.
   
 0.739
TRIM23
Tripartite motif containing 23.
    
 0.655
UBE2H
Ubiquitin conjugating enzyme E2 H.
    
 
 0.639
SNAI1
Snail family transcriptional repressor 1.
    
 0.595
WDR53
WD repeat domain 53.
      
 0.570
TRIM3
Tripartite motif containing 3.
      
 0.550
TRIM44
Tripartite motif containing 44.
    
 0.543
RIPK1
Receptor interacting serine/threonine kinase 1.
    
  0.526
UBE2L6
Ubiquitin conjugating enzyme E2 L6.
    
 0.525
ART5
ADP-ribosyltransferase 5.
   
  
 0.516
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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