Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VRTNVertebrae development associated. (692 aa)    
Predicted Functional Partners:
SALL3
Spalt like transcription factor 3.
   
 
 0.858
C9orf72
C9orf72-SMCR8 complex subunit.
    
   0.833
ENSCAPP00000001526
annotation not available
   
 
 0.695
PROX2
Prospero homeobox 2.
      
 0.685
SYNDIG1L
Synapse differentiation inducing 1 like.
      
 0.685
ABCD4
ATP binding cassette subfamily D member 4.
      
 0.679
LTBP2
Latent transforming growth factor beta binding protein 2.
    
 0.627
STUM
Stum, mechanosensory transduction mediator homolog.
      
 0.614
ENSCAPP00000016766
annotation not available
    
 
 0.599
PDIA4
Protein disulfide isomerase family A member 4.
      
 0.580
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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