STAMBP protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

STAMBP

STAM binding protein. (422 aa)

Predicted Functional Partners:

STAM2

0.987

STAM

0.973

ENSCAPP00000017181

0.967

ENSCAPP00000000576

0.959

ENSCAPP00000004781

0.959

ENSCAPP00000006743

0.946

ENSCAPP00000016987

0.925

PSMD12

0.924

BARD1

0.921

PSMD4

0.913

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BARD1	ENSCAPP00000000576	ENSCAPP00000016499	ENSCAPP00000000576	BRCA1 associated RING domain 1.	annotation not available	0.794
BARD1	ENSCAPP00000004781	ENSCAPP00000016499	ENSCAPP00000004781	BRCA1 associated RING domain 1.	annotation not available	0.794
BARD1	ENSCAPP00000017181	ENSCAPP00000016499	ENSCAPP00000017181	BRCA1 associated RING domain 1.	annotation not available	0.700
BARD1	PSMD12	ENSCAPP00000016499	ENSCAPP00000016144	BRCA1 associated RING domain 1.	Proteasome 26S subunit, non-ATPase 12.	0.441
BARD1	PSMD4	ENSCAPP00000016499	ENSCAPP00000009665	BRCA1 associated RING domain 1.	Proteasome 26S subunit, non-ATPase 4.	0.470
BARD1	STAMBP	ENSCAPP00000016499	ENSCAPP00000004546	BRCA1 associated RING domain 1.	STAM binding protein.	0.921
ENSCAPP00000000576	BARD1	ENSCAPP00000000576	ENSCAPP00000016499	annotation not available	BRCA1 associated RING domain 1.	0.794
ENSCAPP00000000576	ENSCAPP00000004781	ENSCAPP00000000576	ENSCAPP00000004781	annotation not available	annotation not available	0.999
ENSCAPP00000000576	ENSCAPP00000016987	ENSCAPP00000000576	ENSCAPP00000016987	annotation not available	annotation not available	0.798
ENSCAPP00000000576	ENSCAPP00000017181	ENSCAPP00000000576	ENSCAPP00000017181	annotation not available	annotation not available	0.899
ENSCAPP00000000576	PSMD12	ENSCAPP00000000576	ENSCAPP00000016144	annotation not available	Proteasome 26S subunit, non-ATPase 12.	0.801
ENSCAPP00000000576	PSMD4	ENSCAPP00000000576	ENSCAPP00000009665	annotation not available	Proteasome 26S subunit, non-ATPase 4.	0.881
ENSCAPP00000000576	STAM	ENSCAPP00000000576	ENSCAPP00000013160	annotation not available	Signal transducing adaptor molecule.	0.734
ENSCAPP00000000576	STAM2	ENSCAPP00000000576	ENSCAPP00000014498	annotation not available	Signal transducing adaptor molecule 2.	0.734
ENSCAPP00000000576	STAMBP	ENSCAPP00000000576	ENSCAPP00000004546	annotation not available	STAM binding protein.	0.959
ENSCAPP00000004781	BARD1	ENSCAPP00000004781	ENSCAPP00000016499	annotation not available	BRCA1 associated RING domain 1.	0.794
ENSCAPP00000004781	ENSCAPP00000000576	ENSCAPP00000004781	ENSCAPP00000000576	annotation not available	annotation not available	0.999
ENSCAPP00000004781	ENSCAPP00000016987	ENSCAPP00000004781	ENSCAPP00000016987	annotation not available	annotation not available	0.798
ENSCAPP00000004781	ENSCAPP00000017181	ENSCAPP00000004781	ENSCAPP00000017181	annotation not available	annotation not available	0.899
ENSCAPP00000004781	PSMD12	ENSCAPP00000004781	ENSCAPP00000016144	annotation not available	Proteasome 26S subunit, non-ATPase 12.	0.801