STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHF21APHD finger protein 21A. (649 aa)    
Predicted Functional Partners:
KDM1A
Lysine demethylase 1A.
    
 0.998
RCOR1
REST corepressor 1.
   
 0.998
HMG20B
High mobility group 20B.
    
 0.998
HMG20A
High mobility group 20A.
    
 0.989
HDAC1
Histone deacetylase 1.
    
 0.986
HDAC2
Histone deacetylase 2.
    
 0.983
RCOR2
REST corepressor 2.
   
 0.953
ENSCAPP00000013410
annotation not available
    
 0.939
RCOR3
REST corepressor 3.
   
 0.935
XRCC6
X-ray repair cross complementing 6.
    
 0.928
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.