STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHF21APHD finger protein 21A. (649 aa)    
Predicted Functional Partners:
KDM1A
Lysine demethylase 1A.
    
 0.991
RCOR1
REST corepressor 1.
   
 0.985
HMG20B
High mobility group 20B.
    
 0.965
ERCC4
ERCC excision repair 4, endonuclease catalytic subunit.
    
 0.949
ENSCAPP00000013410
annotation not available
    
 0.948
ENSCAPP00000006310
annotation not available
    
 0.947
XPC
XPC complex subunit, DNA damage recognition and repair factor.
    
 0.947
XRCC6
X-ray repair cross complementing 6.
    
 0.946
POLD1
DNA polymerase delta 1, catalytic subunit.
  
 0.946
RAD23A
RAD23 homolog A, nucleotide excision repair protein.
    
 0.940
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.