PCMTD1 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

PCMTD1

protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1. (342 aa)

Predicted Functional Partners:

CUL5

0.995

ENSCAPP00000005342

0.951

ASB4

0.943

ENSCAPP00000016562

0.933

RBX1

0.932

KLHDC1

0.921

SPSB3

0.913

SOCS2

0.913

ASB7

0.868

SOCS7

0.850

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASB4	ASB7	ENSCAPP00000000866	ENSCAPP00000013727	Ankyrin repeat and SOCS box containing 4.	Ankyrin repeat and SOCS box containing 7.	0.860
ASB4	CUL5	ENSCAPP00000000866	ENSCAPP00000012653	Ankyrin repeat and SOCS box containing 4.	Cullin 5.	0.988
ASB4	ENSCAPP00000005342	ENSCAPP00000000866	ENSCAPP00000005342	Ankyrin repeat and SOCS box containing 4.	annotation not available	0.952
ASB4	ENSCAPP00000016562	ENSCAPP00000000866	ENSCAPP00000016562	Ankyrin repeat and SOCS box containing 4.	annotation not available	0.930
ASB4	KLHDC1	ENSCAPP00000000866	ENSCAPP00000014254	Ankyrin repeat and SOCS box containing 4.	Kelch domain containing 1.	0.944
ASB4	PCMTD1	ENSCAPP00000000866	ENSCAPP00000004581	Ankyrin repeat and SOCS box containing 4.	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1.	0.943
ASB4	RBX1	ENSCAPP00000000866	ENSCAPP00000006025	Ankyrin repeat and SOCS box containing 4.	Ring-box 1.	0.923
ASB4	SOCS2	ENSCAPP00000000866	ENSCAPP00000013927	Ankyrin repeat and SOCS box containing 4.	Suppressor of cytokine signaling 2.	0.925
ASB4	SOCS7	ENSCAPP00000000866	ENSCAPP00000010833	Ankyrin repeat and SOCS box containing 4.	Suppressor of cytokine signaling 7.	0.851
ASB4	SPSB3	ENSCAPP00000000866	ENSCAPP00000007288	Ankyrin repeat and SOCS box containing 4.	splA/ryanodine receptor domain and SOCS box containing 3.	0.916
ASB7	ASB4	ENSCAPP00000013727	ENSCAPP00000000866	Ankyrin repeat and SOCS box containing 7.	Ankyrin repeat and SOCS box containing 4.	0.860
ASB7	CUL5	ENSCAPP00000013727	ENSCAPP00000012653	Ankyrin repeat and SOCS box containing 7.	Cullin 5.	0.995
ASB7	ENSCAPP00000005342	ENSCAPP00000013727	ENSCAPP00000005342	Ankyrin repeat and SOCS box containing 7.	annotation not available	0.978
ASB7	ENSCAPP00000016562	ENSCAPP00000013727	ENSCAPP00000016562	Ankyrin repeat and SOCS box containing 7.	annotation not available	0.980
ASB7	KLHDC1	ENSCAPP00000013727	ENSCAPP00000014254	Ankyrin repeat and SOCS box containing 7.	Kelch domain containing 1.	0.841
ASB7	PCMTD1	ENSCAPP00000013727	ENSCAPP00000004581	Ankyrin repeat and SOCS box containing 7.	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1.	0.868
ASB7	RBX1	ENSCAPP00000013727	ENSCAPP00000006025	Ankyrin repeat and SOCS box containing 7.	Ring-box 1.	0.837
ASB7	SOCS2	ENSCAPP00000013727	ENSCAPP00000013927	Ankyrin repeat and SOCS box containing 7.	Suppressor of cytokine signaling 2.	0.829
ASB7	SOCS7	ENSCAPP00000013727	ENSCAPP00000010833	Ankyrin repeat and SOCS box containing 7.	Suppressor of cytokine signaling 7.	0.800
ASB7	SPSB3	ENSCAPP00000013727	ENSCAPP00000007288	Ankyrin repeat and SOCS box containing 7.	splA/ryanodine receptor domain and SOCS box containing 3.	0.818