ENSCAPP00000004584 protein (Cavia aperea) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

ENSCAPP00000004584

annotation not available (399 aa)

Predicted Functional Partners:

SNAP25

0.646

RAB27A

0.607

RAB27B

0.607

SNAP47

0.521

SNAP23

0.500

ENSCAPP00000008916

0.495

VTI1A

0.469

VAMP3

0.451

VTI1B

0.446

CPLX3

0.446

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPLX3	ENSCAPP00000004584	ENSCAPP00000015445	ENSCAPP00000004584	Complexin 3.	annotation not available	0.446
CPLX3	ENSCAPP00000008916	ENSCAPP00000015445	ENSCAPP00000008916	Complexin 3.	annotation not available	0.954
CPLX3	SNAP23	ENSCAPP00000015445	ENSCAPP00000014014	Complexin 3.	Synaptosome associated protein 23.	0.956
CPLX3	SNAP25	ENSCAPP00000015445	ENSCAPP00000001511	Complexin 3.	Synaptosome associated protein 25.	0.983
CPLX3	SNAP47	ENSCAPP00000015445	ENSCAPP00000013170	Complexin 3.	Synaptosome associated protein 47.	0.966
CPLX3	VAMP3	ENSCAPP00000015445	ENSCAPP00000014816	Complexin 3.	Vesicle associated membrane protein 3.	0.925
CPLX3	VTI1A	ENSCAPP00000015445	ENSCAPP00000003487	Complexin 3.	Vesicle transport through interaction with t-SNAREs 1A.	0.947
CPLX3	VTI1B	ENSCAPP00000015445	ENSCAPP00000012064	Complexin 3.	Vesicle transport through interaction with t-SNAREs 1B.	0.947
ENSCAPP00000004584	CPLX3	ENSCAPP00000004584	ENSCAPP00000015445	annotation not available	Complexin 3.	0.446
ENSCAPP00000004584	ENSCAPP00000008916	ENSCAPP00000004584	ENSCAPP00000008916	annotation not available	annotation not available	0.495
ENSCAPP00000004584	RAB27A	ENSCAPP00000004584	ENSCAPP00000000677	annotation not available	RAB27A, member RAS oncogene family.	0.607
ENSCAPP00000004584	RAB27B	ENSCAPP00000004584	ENSCAPP00000007374	annotation not available	RAB27B, member RAS oncogene family.	0.607
ENSCAPP00000004584	SNAP23	ENSCAPP00000004584	ENSCAPP00000014014	annotation not available	Synaptosome associated protein 23.	0.500
ENSCAPP00000004584	SNAP25	ENSCAPP00000004584	ENSCAPP00000001511	annotation not available	Synaptosome associated protein 25.	0.646
ENSCAPP00000004584	SNAP47	ENSCAPP00000004584	ENSCAPP00000013170	annotation not available	Synaptosome associated protein 47.	0.521
ENSCAPP00000004584	VAMP3	ENSCAPP00000004584	ENSCAPP00000014816	annotation not available	Vesicle associated membrane protein 3.	0.451
ENSCAPP00000004584	VTI1A	ENSCAPP00000004584	ENSCAPP00000003487	annotation not available	Vesicle transport through interaction with t-SNAREs 1A.	0.469
ENSCAPP00000004584	VTI1B	ENSCAPP00000004584	ENSCAPP00000012064	annotation not available	Vesicle transport through interaction with t-SNAREs 1B.	0.446
ENSCAPP00000008916	CPLX3	ENSCAPP00000008916	ENSCAPP00000015445	annotation not available	Complexin 3.	0.954
ENSCAPP00000008916	ENSCAPP00000004584	ENSCAPP00000008916	ENSCAPP00000004584	annotation not available	annotation not available	0.495