STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TBRG1Transforming growth factor beta regulator 1. (259 aa)    
Predicted Functional Partners:
KDM6B
Lysine demethylase 6B.
   
 0.975
ENSCAPP00000001550
annotation not available
    
 0.871
ASH2L
ASH2 like, histone lysine methyltransferase complex subunit.
    
 0.856
ENSCAPP00000015921
annotation not available
    
 0.856
CENPN
Centromere protein N.
   
 0.785
PAXIP1
PAX interacting protein 1.
   
 0.763
ENSCAPP00000001835
annotation not available
    
 0.736
ALKBH3
alkB homolog 3, alpha-ketoglutaratedependent dioxygenase.
    
 0.716
ENSCAPP00000005081
annotation not available
    
 0.716
ENSCAPP00000005146
annotation not available
    
 0.716
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.