Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HINFPHistone H4 transcription factor. (504 aa)    
Predicted Functional Partners:
NPAT
Nuclear protein, coactivator of histone transcription.
    
 
 0.949
SDK2
Sidekick cell adhesion molecule 2.
      
 0.854
ENSCAPP00000004459
annotation not available
      
 0.716
SDK1
Sidekick cell adhesion molecule 1.
      
 0.680
E2F7
E2F transcription factor 7.
      
 0.667
LETM1
Leucine zipper and EF-hand containing transmembrane protein 1.
      
 0.600
POU2F1
POU class 2 homeobox 1.
      
 0.571
LSM10
LSM10, U7 small nuclear RNA associated.
      
 0.570
PSMB7
Proteasome 20S subunit beta 7.
      
 0.569
E2F8
E2F transcription factor 8.
      
 0.454
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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