STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HINFPHistone H4 transcription factor. (504 aa)    
Predicted Functional Partners:
TAF8
TATA-box binding protein associated factor 8.
   
    0.669
ENSCAPP00000018235
annotation not available
   
    0.668
NPAT
Nuclear protein, coactivator of histone transcription.
    
 
 0.650
E2F7
E2F transcription factor 7.
      
 0.564
ENSCAPP00000005523
annotation not available
      
 0.564
ENSCAPP00000004459
annotation not available
      
 0.557
LSM10
LSM10, U7 small nuclear RNA associated.
      
 0.544
ALX4
ALX homeobox 4.
    
 
 0.413
DMBX1
Diencephalon/mesencephalon homeobox 1.
    
 
 0.412
LETM1
Leucine zipper and EF-hand containing transmembrane protein 1.
      
 0.404
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.