Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SRPRASRP receptor subunit alpha. (590 aa)    
Predicted Functional Partners:
SRP54
Signal recognition particle 54.
  
 0.984
SEC63
SEC63 homolog, protein translocation regulator.
   
 
 0.978
SRP72
Signal recognition particle 72.
   
 0.963
DDRGK1
DDRGK domain containing 1.
    
 
 0.958
SRP68
Signal recognition particle 68.
   
 0.932
ENSCAPP00000013443
annotation not available
   
 
 0.920
RPL8
Ribosomal protein L8.
   
 
 0.843
RPL35
Ribosomal protein L35.
   
 
 0.842
RPL23
Ribosomal protein L23.
   
 
 0.834
ENSCAPP00000018686
annotation not available
     
  0.831
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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