Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RTN4RL1Reticulon 4 receptor like 1. (450 aa)    
Predicted Functional Partners:
SMYD4
SET and MYND domain containing 4.
    
 
 0.703
PTPRS
Protein tyrosine phosphatase receptor type S.
    
 0.663
ENSCAPP00000003217
annotation not available
    
 0.661
NTNG1
Netrin G1.
    
 0.585
TONSL
Tonsoku like, DNA repair protein.
    
 0.552
EPHA10
EPH receptor A10.
    
 0.538
ENSCAPP00000005173
annotation not available
      
 0.534
EEF1G
Eukaryotic translation elongation factor 1 gamma.
    
 0.528
MET
MET proto-oncogene, receptor tyrosine kinase.
    
 0.523
MST1R
Macrophage stimulating 1 receptor.
    
 0.523
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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