Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000004625annotation not available (1403 aa)    
Predicted Functional Partners:
ACVR1
Activin A receptor type 1.
    
  0.903
EPHA3
EPH receptor A3.
    
  0.860
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
    
  0.859
ENSCAPP00000001161
annotation not available
    
  0.858
ENSCAPP00000001654
annotation not available
    
  0.855
SF3B4
Splicing factor 3b subunit 4.
    
  0.855
SF3A1
Splicing factor 3a subunit 1.
    
  0.855
SMC2
Structural maintenance of chromosomes 2.
    
   0.846
CCDC113
Coiled-coil domain containing 113.
   
 
 0.825
SF3B1
Splicing factor 3b subunit 1.
    
  0.816
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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