ENSCAPP00000004629 protein (Cavia aperea) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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Gene Fusion

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[Homology]

Score

ENSCAPP00000004629

annotation not available (127 aa)

Predicted Functional Partners:

FABP2

0.943

ENSCAPP00000007118

0.872

FABP5

0.870

FABP6

0.839

FLNA

0.825

ENSCAPP00000003965

0.788

ENSCAPP00000010789

0.788

ENSCAPP00000001033

0.779

ENSCAPP00000017807

0.777

APOB

0.771

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APOB	ENSCAPP00000001033	ENSCAPP00000013823	ENSCAPP00000001033	Apolipoprotein B.	annotation not available	0.998
APOB	ENSCAPP00000004629	ENSCAPP00000013823	ENSCAPP00000004629	Apolipoprotein B.	annotation not available	0.771
APOB	ENSCAPP00000017807	ENSCAPP00000013823	ENSCAPP00000017807	Apolipoprotein B.	annotation not available	0.917
APOB	FABP2	ENSCAPP00000013823	ENSCAPP00000017525	Apolipoprotein B.	Fatty acid binding protein 2.	0.700
APOB	FABP6	ENSCAPP00000013823	ENSCAPP00000015424	Apolipoprotein B.	Fatty acid binding protein 6.	0.438
ENSCAPP00000001033	APOB	ENSCAPP00000001033	ENSCAPP00000013823	annotation not available	Apolipoprotein B.	0.998
ENSCAPP00000001033	ENSCAPP00000004629	ENSCAPP00000001033	ENSCAPP00000004629	annotation not available	annotation not available	0.779
ENSCAPP00000001033	ENSCAPP00000017807	ENSCAPP00000001033	ENSCAPP00000017807	annotation not available	annotation not available	0.892
ENSCAPP00000003965	ENSCAPP00000004629	ENSCAPP00000003965	ENSCAPP00000004629	annotation not available	annotation not available	0.788
ENSCAPP00000003965	ENSCAPP00000007118	ENSCAPP00000003965	ENSCAPP00000007118	annotation not available	annotation not available	0.838
ENSCAPP00000003965	FABP2	ENSCAPP00000003965	ENSCAPP00000017525	annotation not available	Fatty acid binding protein 2.	0.875
ENSCAPP00000003965	FABP5	ENSCAPP00000003965	ENSCAPP00000008902	annotation not available	Fatty acid binding protein 5.	0.869
ENSCAPP00000003965	FABP6	ENSCAPP00000003965	ENSCAPP00000015424	annotation not available	Fatty acid binding protein 6.	0.896
ENSCAPP00000004629	APOB	ENSCAPP00000004629	ENSCAPP00000013823	annotation not available	Apolipoprotein B.	0.771
ENSCAPP00000004629	ENSCAPP00000001033	ENSCAPP00000004629	ENSCAPP00000001033	annotation not available	annotation not available	0.779
ENSCAPP00000004629	ENSCAPP00000003965	ENSCAPP00000004629	ENSCAPP00000003965	annotation not available	annotation not available	0.788
ENSCAPP00000004629	ENSCAPP00000007118	ENSCAPP00000004629	ENSCAPP00000007118	annotation not available	annotation not available	0.872
ENSCAPP00000004629	ENSCAPP00000010789	ENSCAPP00000004629	ENSCAPP00000010789	annotation not available	annotation not available	0.788
ENSCAPP00000004629	ENSCAPP00000017807	ENSCAPP00000004629	ENSCAPP00000017807	annotation not available	annotation not available	0.777
ENSCAPP00000004629	FABP2	ENSCAPP00000004629	ENSCAPP00000017525	annotation not available	Fatty acid binding protein 2.	0.943