ENSCAPP00000004629 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCAPP00000004629

annotation not available (127 aa)

Predicted Functional Partners:

FABP2

0.803

ENSCAPP00000001033

0.794

APOB

0.725

ENSCAPP00000017807

0.701

ENSCAPP00000003965

0.696

ENSCAPP00000010789

0.696

PPARA

0.665

ENSCAPP00000007118

0.660

FABP5

0.634

PPARG

0.587

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APOB	ENSCAPP00000001033	ENSCAPP00000013823	ENSCAPP00000001033	Apolipoprotein B.	annotation not available	0.990
APOB	ENSCAPP00000003965	ENSCAPP00000013823	ENSCAPP00000003965	Apolipoprotein B.	annotation not available	0.413
APOB	ENSCAPP00000004629	ENSCAPP00000013823	ENSCAPP00000004629	Apolipoprotein B.	annotation not available	0.725
APOB	ENSCAPP00000007118	ENSCAPP00000013823	ENSCAPP00000007118	Apolipoprotein B.	annotation not available	0.413
APOB	ENSCAPP00000010789	ENSCAPP00000013823	ENSCAPP00000010789	Apolipoprotein B.	annotation not available	0.413
APOB	ENSCAPP00000017807	ENSCAPP00000013823	ENSCAPP00000017807	Apolipoprotein B.	annotation not available	0.872
APOB	FABP2	ENSCAPP00000013823	ENSCAPP00000017525	Apolipoprotein B.	Fatty acid binding protein 2.	0.736
APOB	FABP5	ENSCAPP00000013823	ENSCAPP00000008902	Apolipoprotein B.	Fatty acid binding protein 5.	0.413
ENSCAPP00000001033	APOB	ENSCAPP00000001033	ENSCAPP00000013823	annotation not available	Apolipoprotein B.	0.990
ENSCAPP00000001033	ENSCAPP00000004629	ENSCAPP00000001033	ENSCAPP00000004629	annotation not available	annotation not available	0.794
ENSCAPP00000001033	ENSCAPP00000017807	ENSCAPP00000001033	ENSCAPP00000017807	annotation not available	annotation not available	0.742
ENSCAPP00000003965	APOB	ENSCAPP00000003965	ENSCAPP00000013823	annotation not available	Apolipoprotein B.	0.413
ENSCAPP00000003965	ENSCAPP00000004629	ENSCAPP00000003965	ENSCAPP00000004629	annotation not available	annotation not available	0.696
ENSCAPP00000003965	ENSCAPP00000007118	ENSCAPP00000003965	ENSCAPP00000007118	annotation not available	annotation not available	0.614
ENSCAPP00000003965	FABP2	ENSCAPP00000003965	ENSCAPP00000017525	annotation not available	Fatty acid binding protein 2.	0.627
ENSCAPP00000003965	FABP5	ENSCAPP00000003965	ENSCAPP00000008902	annotation not available	Fatty acid binding protein 5.	0.716
ENSCAPP00000004629	APOB	ENSCAPP00000004629	ENSCAPP00000013823	annotation not available	Apolipoprotein B.	0.725
ENSCAPP00000004629	ENSCAPP00000001033	ENSCAPP00000004629	ENSCAPP00000001033	annotation not available	annotation not available	0.794
ENSCAPP00000004629	ENSCAPP00000003965	ENSCAPP00000004629	ENSCAPP00000003965	annotation not available	annotation not available	0.696
ENSCAPP00000004629	ENSCAPP00000007118	ENSCAPP00000004629	ENSCAPP00000007118	annotation not available	annotation not available	0.660