ENSCAPP00000004633 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSCAPP00000004633

annotation not available (458 aa)

Predicted Functional Partners:

ENSCAPP00000013457

0.799

SUMO1

0.692

RANGAP1

0.640

TOP2A

0.607

TOP2B

0.607

MYSM1

0.592

ENSCAPP00000012723

0.590

ENSCAPP00000013410

0.532

ENSCAPP00000013573

0.528

RANBP2

0.524

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000004633	ENSCAPP00000012723	ENSCAPP00000004633	ENSCAPP00000012723	annotation not available	annotation not available	0.590
ENSCAPP00000004633	ENSCAPP00000013410	ENSCAPP00000004633	ENSCAPP00000013410	annotation not available	annotation not available	0.532
ENSCAPP00000004633	ENSCAPP00000013457	ENSCAPP00000004633	ENSCAPP00000013457	annotation not available	annotation not available	0.799
ENSCAPP00000004633	ENSCAPP00000013573	ENSCAPP00000004633	ENSCAPP00000013573	annotation not available	annotation not available	0.528
ENSCAPP00000004633	MYSM1	ENSCAPP00000004633	ENSCAPP00000004064	annotation not available	Myb like, SWIRM and MPN domains 1.	0.592
ENSCAPP00000004633	RANBP2	ENSCAPP00000004633	ENSCAPP00000009214	annotation not available	RAN binding protein 2.	0.524
ENSCAPP00000004633	RANGAP1	ENSCAPP00000004633	ENSCAPP00000003539	annotation not available	Ran GTPase activating protein 1.	0.640
ENSCAPP00000004633	SUMO1	ENSCAPP00000004633	ENSCAPP00000016383	annotation not available	Small ubiquitin like modifier 1.	0.692
ENSCAPP00000004633	TOP2A	ENSCAPP00000004633	ENSCAPP00000002685	annotation not available	DNA topoisomerase II alpha.	0.607
ENSCAPP00000004633	TOP2B	ENSCAPP00000004633	ENSCAPP00000003075	annotation not available	DNA topoisomerase II beta.	0.607
ENSCAPP00000012723	ENSCAPP00000004633	ENSCAPP00000012723	ENSCAPP00000004633	annotation not available	annotation not available	0.590
ENSCAPP00000013410	ENSCAPP00000004633	ENSCAPP00000013410	ENSCAPP00000004633	annotation not available	annotation not available	0.532
ENSCAPP00000013410	ENSCAPP00000013457	ENSCAPP00000013410	ENSCAPP00000013457	annotation not available	annotation not available	0.927
ENSCAPP00000013410	MYSM1	ENSCAPP00000013410	ENSCAPP00000004064	annotation not available	Myb like, SWIRM and MPN domains 1.	0.770
ENSCAPP00000013410	SUMO1	ENSCAPP00000013410	ENSCAPP00000016383	annotation not available	Small ubiquitin like modifier 1.	0.960
ENSCAPP00000013457	ENSCAPP00000004633	ENSCAPP00000013457	ENSCAPP00000004633	annotation not available	annotation not available	0.799
ENSCAPP00000013457	ENSCAPP00000013410	ENSCAPP00000013457	ENSCAPP00000013410	annotation not available	annotation not available	0.927
ENSCAPP00000013457	MYSM1	ENSCAPP00000013457	ENSCAPP00000004064	annotation not available	Myb like, SWIRM and MPN domains 1.	0.608
ENSCAPP00000013457	RANBP2	ENSCAPP00000013457	ENSCAPP00000009214	annotation not available	RAN binding protein 2.	0.991
ENSCAPP00000013457	RANGAP1	ENSCAPP00000013457	ENSCAPP00000003539	annotation not available	Ran GTPase activating protein 1.	0.988