NCOR2 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Co-occurrence

Co-expression

Experiments

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[Homology]

Score

NCOR2

Nuclear receptor corepressor 2. (2500 aa)

Predicted Functional Partners:

HDAC3

0.998

SIN3A

0.997

HDAC1

0.997

ENSCAPP00000017472

0.997

RBPJ

0.996

HDAC2

0.991

THRB

0.988

RXRA

0.987

ENSCAPP00000000021

0.985

PPARG

0.985

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000000021	ENSCAPP00000017472	ENSCAPP00000000021	ENSCAPP00000017472	annotation not available	annotation not available	0.983
ENSCAPP00000000021	HDAC1	ENSCAPP00000000021	ENSCAPP00000015327	annotation not available	Histone deacetylase 1.	0.822
ENSCAPP00000000021	HDAC2	ENSCAPP00000000021	ENSCAPP00000016491	annotation not available	Histone deacetylase 2.	0.822
ENSCAPP00000000021	HDAC3	ENSCAPP00000000021	ENSCAPP00000010620	annotation not available	Histone deacetylase 3.	0.984
ENSCAPP00000000021	NCOR2	ENSCAPP00000000021	ENSCAPP00000004640	annotation not available	Nuclear receptor corepressor 2.	0.985
ENSCAPP00000000021	PPARG	ENSCAPP00000000021	ENSCAPP00000008332	annotation not available	Peroxisome proliferator activated receptor gamma.	0.606
ENSCAPP00000000021	RBPJ	ENSCAPP00000000021	ENSCAPP00000009662	annotation not available	Recombination signal binding protein for immunoglobulin kappa J region.	0.512
ENSCAPP00000000021	RXRA	ENSCAPP00000000021	ENSCAPP00000008577	annotation not available	Retinoid X receptor alpha.	0.495
ENSCAPP00000000021	SIN3A	ENSCAPP00000000021	ENSCAPP00000010185	annotation not available	SIN3 transcription regulator family member A.	0.640
ENSCAPP00000000021	THRB	ENSCAPP00000000021	ENSCAPP00000011683	annotation not available	Thyroid hormone receptor beta.	0.699
ENSCAPP00000017472	ENSCAPP00000000021	ENSCAPP00000017472	ENSCAPP00000000021	annotation not available	annotation not available	0.983
ENSCAPP00000017472	HDAC1	ENSCAPP00000017472	ENSCAPP00000015327	annotation not available	Histone deacetylase 1.	0.783
ENSCAPP00000017472	HDAC2	ENSCAPP00000017472	ENSCAPP00000016491	annotation not available	Histone deacetylase 2.	0.783
ENSCAPP00000017472	HDAC3	ENSCAPP00000017472	ENSCAPP00000010620	annotation not available	Histone deacetylase 3.	0.994
ENSCAPP00000017472	NCOR2	ENSCAPP00000017472	ENSCAPP00000004640	annotation not available	Nuclear receptor corepressor 2.	0.997
ENSCAPP00000017472	PPARG	ENSCAPP00000017472	ENSCAPP00000008332	annotation not available	Peroxisome proliferator activated receptor gamma.	0.424
ENSCAPP00000017472	RBPJ	ENSCAPP00000017472	ENSCAPP00000009662	annotation not available	Recombination signal binding protein for immunoglobulin kappa J region.	0.639
ENSCAPP00000017472	RXRA	ENSCAPP00000017472	ENSCAPP00000008577	annotation not available	Retinoid X receptor alpha.	0.592
ENSCAPP00000017472	SIN3A	ENSCAPP00000017472	ENSCAPP00000010185	annotation not available	SIN3 transcription regulator family member A.	0.803
ENSCAPP00000017472	THRB	ENSCAPP00000017472	ENSCAPP00000011683	annotation not available	Thyroid hormone receptor beta.	0.424