TMEM144 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TMEM144

Transmembrane protein 144. (235 aa)

Predicted Functional Partners:

ENSCAPP00000009964

0.544

SLC35B3

0.544

ENSCAPP00000017675

0.537

SLC35C1

0.535

NPAS4

0.439

ENSCAPP00000007915

0.431

ENSCAPP00000014271

0.403

ENSCAPP00000017812

0.403

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000007915	TMEM144	ENSCAPP00000007915	ENSCAPP00000004642	annotation not available	Transmembrane protein 144.	0.431
ENSCAPP00000009964	ENSCAPP00000017675	ENSCAPP00000009964	ENSCAPP00000017675	annotation not available	annotation not available	0.531
ENSCAPP00000009964	TMEM144	ENSCAPP00000009964	ENSCAPP00000004642	annotation not available	Transmembrane protein 144.	0.544
ENSCAPP00000014271	ENSCAPP00000017812	ENSCAPP00000014271	ENSCAPP00000017812	annotation not available	annotation not available	0.899
ENSCAPP00000014271	SLC35C1	ENSCAPP00000014271	ENSCAPP00000016317	annotation not available	Solute carrier family 35 member C1.	0.434
ENSCAPP00000014271	TMEM144	ENSCAPP00000014271	ENSCAPP00000004642	annotation not available	Transmembrane protein 144.	0.403
ENSCAPP00000017675	ENSCAPP00000009964	ENSCAPP00000017675	ENSCAPP00000009964	annotation not available	annotation not available	0.531
ENSCAPP00000017675	TMEM144	ENSCAPP00000017675	ENSCAPP00000004642	annotation not available	Transmembrane protein 144.	0.537
ENSCAPP00000017812	ENSCAPP00000014271	ENSCAPP00000017812	ENSCAPP00000014271	annotation not available	annotation not available	0.899
ENSCAPP00000017812	SLC35C1	ENSCAPP00000017812	ENSCAPP00000016317	annotation not available	Solute carrier family 35 member C1.	0.434
ENSCAPP00000017812	TMEM144	ENSCAPP00000017812	ENSCAPP00000004642	annotation not available	Transmembrane protein 144.	0.403
NPAS4	TMEM144	ENSCAPP00000002443	ENSCAPP00000004642	Neuronal PAS domain protein 4.	Transmembrane protein 144.	0.439
SLC35B3	SLC35C1	ENSCAPP00000017926	ENSCAPP00000016317	Solute carrier family 35 member B3.	Solute carrier family 35 member C1.	0.563
SLC35B3	TMEM144	ENSCAPP00000017926	ENSCAPP00000004642	Solute carrier family 35 member B3.	Transmembrane protein 144.	0.544
SLC35C1	ENSCAPP00000014271	ENSCAPP00000016317	ENSCAPP00000014271	Solute carrier family 35 member C1.	annotation not available	0.434
SLC35C1	ENSCAPP00000017812	ENSCAPP00000016317	ENSCAPP00000017812	Solute carrier family 35 member C1.	annotation not available	0.434
SLC35C1	SLC35B3	ENSCAPP00000016317	ENSCAPP00000017926	Solute carrier family 35 member C1.	Solute carrier family 35 member B3.	0.563
SLC35C1	TMEM144	ENSCAPP00000016317	ENSCAPP00000004642	Solute carrier family 35 member C1.	Transmembrane protein 144.	0.535
TMEM144	ENSCAPP00000007915	ENSCAPP00000004642	ENSCAPP00000007915	Transmembrane protein 144.	annotation not available	0.431
TMEM144	ENSCAPP00000009964	ENSCAPP00000004642	ENSCAPP00000009964	Transmembrane protein 144.	annotation not available	0.544