ENSCAPP00000004662 protein (Cavia aperea) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

ENSCAPP00000004662

annotation not available (138 aa)

Predicted Functional Partners:

EMC4

0.622

CDC73

0.614

PAF1

0.593

CTR9

0.561

CINP

0.561

RTF1

0.535

C8B

0.534

MMGT1

0.532

EMC3

0.532

C6

0.530

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C6	C8B	ENSCAPP00000010456	ENSCAPP00000011935	Complement C6.	Complement C8 beta chain.	0.963
C6	ENSCAPP00000004662	ENSCAPP00000010456	ENSCAPP00000004662	Complement C6.	annotation not available	0.530
C8B	C6	ENSCAPP00000011935	ENSCAPP00000010456	Complement C8 beta chain.	Complement C6.	0.963
C8B	ENSCAPP00000004662	ENSCAPP00000011935	ENSCAPP00000004662	Complement C8 beta chain.	annotation not available	0.534
CDC73	CINP	ENSCAPP00000017274	ENSCAPP00000010336	Cell division cycle 73.	Cyclin dependent kinase 2 interacting protein.	0.957
CDC73	CTR9	ENSCAPP00000017274	ENSCAPP00000009111	Cell division cycle 73.	CTR9 homolog, Paf1/RNA polymerase II complex component.	0.999
CDC73	ENSCAPP00000004662	ENSCAPP00000017274	ENSCAPP00000004662	Cell division cycle 73.	annotation not available	0.614
CDC73	PAF1	ENSCAPP00000017274	ENSCAPP00000001361	Cell division cycle 73.	PAF1 homolog, Paf1/RNA polymerase II complex component.	0.999
CDC73	RTF1	ENSCAPP00000017274	ENSCAPP00000017027	Cell division cycle 73.	RTF1 homolog, Paf1/RNA polymerase II complex component.	0.999
CINP	CDC73	ENSCAPP00000010336	ENSCAPP00000017274	Cyclin dependent kinase 2 interacting protein.	Cell division cycle 73.	0.957
CINP	ENSCAPP00000004662	ENSCAPP00000010336	ENSCAPP00000004662	Cyclin dependent kinase 2 interacting protein.	annotation not available	0.561
CINP	PAF1	ENSCAPP00000010336	ENSCAPP00000001361	Cyclin dependent kinase 2 interacting protein.	PAF1 homolog, Paf1/RNA polymerase II complex component.	0.962
CINP	RTF1	ENSCAPP00000010336	ENSCAPP00000017027	Cyclin dependent kinase 2 interacting protein.	RTF1 homolog, Paf1/RNA polymerase II complex component.	0.962
CTR9	CDC73	ENSCAPP00000009111	ENSCAPP00000017274	CTR9 homolog, Paf1/RNA polymerase II complex component.	Cell division cycle 73.	0.999
CTR9	ENSCAPP00000004662	ENSCAPP00000009111	ENSCAPP00000004662	CTR9 homolog, Paf1/RNA polymerase II complex component.	annotation not available	0.561
CTR9	PAF1	ENSCAPP00000009111	ENSCAPP00000001361	CTR9 homolog, Paf1/RNA polymerase II complex component.	PAF1 homolog, Paf1/RNA polymerase II complex component.	0.999
CTR9	RTF1	ENSCAPP00000009111	ENSCAPP00000017027	CTR9 homolog, Paf1/RNA polymerase II complex component.	RTF1 homolog, Paf1/RNA polymerase II complex component.	0.999
EMC3	EMC4	ENSCAPP00000013877	ENSCAPP00000004183	ER membrane protein complex subunit 3.	ER membrane protein complex subunit 4.	0.999
EMC3	ENSCAPP00000004662	ENSCAPP00000013877	ENSCAPP00000004662	ER membrane protein complex subunit 3.	annotation not available	0.532
EMC3	MMGT1	ENSCAPP00000013877	ENSCAPP00000006105	ER membrane protein complex subunit 3.	Membrane magnesium transporter 1.	0.999