Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDH6Cadherin 6. (608 aa)    
Predicted Functional Partners:
CTNNB1
Catenin beta 1.
    
 0.979
CDH13
Cadherin 13.
     
  0.962
CDH2
Cadherin 2.
     
 0.960
CDH18
Cadherin 18.
   
 0.959
JUP
Junction plakoglobin.
    
 0.958
CDH9
Cadherin 9.
   
 
  0.957
ENSCAPP00000012377
annotation not available
   
 
  0.953
CTNND1
Catenin delta 1.
    
 0.951
CDH17
Cadherin 17.
     
 0.950
ENSCAPP00000014083
annotation not available
     
 0.950
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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