YPEL4 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

YPEL4

Yippee like 4. (127 aa)

Predicted Functional Partners:

WDR26

0.805

ENSCAPP00000017829

0.743

ENSCAPP00000003934

0.739

GID8

0.735

MAEA

0.728

RANBP10

0.694

ENSCAPP00000005260

0.661

ENSCAPP00000006852

0.623

HNRNPAB

0.608

ENSCAPP00000012025

0.602

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000003934	ENSCAPP00000017829	ENSCAPP00000003934	ENSCAPP00000017829	annotation not available	annotation not available	0.990
ENSCAPP00000003934	GID8	ENSCAPP00000003934	ENSCAPP00000014972	annotation not available	GID complex subunit 8 homolog.	0.997
ENSCAPP00000003934	MAEA	ENSCAPP00000003934	ENSCAPP00000013544	annotation not available	Macrophage erythroblast attacher.	0.987
ENSCAPP00000003934	RANBP10	ENSCAPP00000003934	ENSCAPP00000003571	annotation not available	RAN binding protein 10.	0.978
ENSCAPP00000003934	WDR26	ENSCAPP00000003934	ENSCAPP00000006995	annotation not available	WD repeat domain 26.	0.998
ENSCAPP00000003934	YPEL4	ENSCAPP00000003934	ENSCAPP00000004671	annotation not available	Yippee like 4.	0.739
ENSCAPP00000005260	MAEA	ENSCAPP00000005260	ENSCAPP00000013544	annotation not available	Macrophage erythroblast attacher.	0.839
ENSCAPP00000005260	YPEL4	ENSCAPP00000005260	ENSCAPP00000004671	annotation not available	Yippee like 4.	0.661
ENSCAPP00000006852	HNRNPAB	ENSCAPP00000006852	ENSCAPP00000002406	annotation not available	Heterogeneous nuclear ribonucleoprotein A/B.	0.490
ENSCAPP00000006852	YPEL4	ENSCAPP00000006852	ENSCAPP00000004671	annotation not available	Yippee like 4.	0.623
ENSCAPP00000012025	YPEL4	ENSCAPP00000012025	ENSCAPP00000004671	annotation not available	Yippee like 4.	0.602
ENSCAPP00000017829	ENSCAPP00000003934	ENSCAPP00000017829	ENSCAPP00000003934	annotation not available	annotation not available	0.990
ENSCAPP00000017829	GID8	ENSCAPP00000017829	ENSCAPP00000014972	annotation not available	GID complex subunit 8 homolog.	0.994
ENSCAPP00000017829	MAEA	ENSCAPP00000017829	ENSCAPP00000013544	annotation not available	Macrophage erythroblast attacher.	0.999
ENSCAPP00000017829	RANBP10	ENSCAPP00000017829	ENSCAPP00000003571	annotation not available	RAN binding protein 10.	0.995
ENSCAPP00000017829	WDR26	ENSCAPP00000017829	ENSCAPP00000006995	annotation not available	WD repeat domain 26.	0.999
ENSCAPP00000017829	YPEL4	ENSCAPP00000017829	ENSCAPP00000004671	annotation not available	Yippee like 4.	0.743
GID8	ENSCAPP00000003934	ENSCAPP00000014972	ENSCAPP00000003934	GID complex subunit 8 homolog.	annotation not available	0.997
GID8	ENSCAPP00000017829	ENSCAPP00000014972	ENSCAPP00000017829	GID complex subunit 8 homolog.	annotation not available	0.994
GID8	MAEA	ENSCAPP00000014972	ENSCAPP00000013544	GID complex subunit 8 homolog.	Macrophage erythroblast attacher.	0.991