ENSCAPP00000004672 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSCAPP00000004672

annotation not available (111 aa)

Predicted Functional Partners:

ENSCAPP00000002903

0.999

MCM2

0.999

ENSCAPP00000009470

0.999

ENSCAPP00000013166

0.999

MCM3

0.999

MCM6

0.998

MCM9

0.997

ENSCAPP00000010914

0.994

ENSCAPP00000002257

0.931

ENSCAPP00000000509

0.915

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000000509	ENSCAPP00000002903	ENSCAPP00000000509	ENSCAPP00000002903	annotation not available	annotation not available	0.999
ENSCAPP00000000509	ENSCAPP00000004672	ENSCAPP00000000509	ENSCAPP00000004672	annotation not available	annotation not available	0.915
ENSCAPP00000000509	ENSCAPP00000009470	ENSCAPP00000000509	ENSCAPP00000009470	annotation not available	annotation not available	0.998
ENSCAPP00000000509	ENSCAPP00000010914	ENSCAPP00000000509	ENSCAPP00000010914	annotation not available	annotation not available	0.878
ENSCAPP00000000509	ENSCAPP00000013166	ENSCAPP00000000509	ENSCAPP00000013166	annotation not available	annotation not available	0.999
ENSCAPP00000000509	MCM2	ENSCAPP00000000509	ENSCAPP00000003876	annotation not available	Minichromosome maintenance complex component 2.	0.998
ENSCAPP00000000509	MCM3	ENSCAPP00000000509	ENSCAPP00000013580	annotation not available	Minichromosome maintenance complex component 3.	0.998
ENSCAPP00000000509	MCM6	ENSCAPP00000000509	ENSCAPP00000000980	annotation not available	Minichromosome maintenance complex component 6.	0.998
ENSCAPP00000000509	MCM9	ENSCAPP00000000509	ENSCAPP00000016798	annotation not available	Minichromosome maintenance 9 homologous recombination repair factor.	0.975
ENSCAPP00000002257	ENSCAPP00000002903	ENSCAPP00000002257	ENSCAPP00000002903	annotation not available	annotation not available	0.955
ENSCAPP00000002257	ENSCAPP00000004672	ENSCAPP00000002257	ENSCAPP00000004672	annotation not available	annotation not available	0.931
ENSCAPP00000002257	ENSCAPP00000009470	ENSCAPP00000002257	ENSCAPP00000009470	annotation not available	annotation not available	0.967
ENSCAPP00000002257	ENSCAPP00000010914	ENSCAPP00000002257	ENSCAPP00000010914	annotation not available	annotation not available	0.974
ENSCAPP00000002257	ENSCAPP00000013166	ENSCAPP00000002257	ENSCAPP00000013166	annotation not available	annotation not available	0.953
ENSCAPP00000002257	MCM2	ENSCAPP00000002257	ENSCAPP00000003876	annotation not available	Minichromosome maintenance complex component 2.	0.996
ENSCAPP00000002257	MCM3	ENSCAPP00000002257	ENSCAPP00000013580	annotation not available	Minichromosome maintenance complex component 3.	0.952
ENSCAPP00000002257	MCM6	ENSCAPP00000002257	ENSCAPP00000000980	annotation not available	Minichromosome maintenance complex component 6.	0.985
ENSCAPP00000002257	MCM9	ENSCAPP00000002257	ENSCAPP00000016798	annotation not available	Minichromosome maintenance 9 homologous recombination repair factor.	0.968
ENSCAPP00000002903	ENSCAPP00000000509	ENSCAPP00000002903	ENSCAPP00000000509	annotation not available	annotation not available	0.999
ENSCAPP00000002903	ENSCAPP00000002257	ENSCAPP00000002903	ENSCAPP00000002257	annotation not available	annotation not available	0.955