Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TM4SF4Transmembrane 4 L six family member 4. (200 aa)    
Predicted Functional Partners:
SLC6A1
Solute carrier family 6 member 1.
    
 
 0.964
TM4SF20
Transmembrane 4 L six family member 20.
   
  
 0.859
ABHD15
Abhydrolase domain containing 15.
      
 0.723
ERC2
ELKS/RAB6-interacting/CAST family member 2.
      
 0.658
ASGR1
Asialoglycoprotein receptor 1.
   
  
 0.646
ENSCAPP00000005674
annotation not available
    
 
 0.580
SLC6A9
Solute carrier family 6 member 9.
    
 
 0.580
SLC6A7
Solute carrier family 6 member 7.
    
 
 0.580
LGALS2
Galectin 2.
      
 0.570
GULP1
GULP PTB domain containing engulfment adaptor 1.
      
 0.568
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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