STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSR3Signal sequence receptor subunit 3. (129 aa)    
Predicted Functional Partners:
SSR4
Signal sequence receptor subunit 4.
   
 0.999
SSR1
Signal sequence receptor subunit 1.
   
 0.999
SEC61B
SEC61 translocon beta subunit.
   
 0.997
SEC61A1
SEC61 translocon alpha 1 subunit.
   
 0.987
SEC61A2
SEC61 translocon alpha 2 subunit.
   
 0.987
DDOST
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit.
   
 0.982
RPL19
Ribosomal protein L19.
   
   0.960
RPL8
Ribosomal protein L8.
    
   0.957
ENSCAPP00000012651
annotation not available
    
   0.957
RPL32
Ribosomal protein L32.
   
   0.954
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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