TRIM42 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

TRIM42

Tripartite motif containing 42. (711 aa)

Predicted Functional Partners:

ENSCAPP00000010697

0.850

ENSCAPP00000004587

0.833

ENSCAPP00000005853

0.708

ENSCAPP00000005909

0.708

TRIM23

0.698

TRIM69

0.688

ENSCAPP00000004272

0.686

YWHAQ

0.629

ENSCAPP00000006187

0.629

FSD2

0.623

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000004272	ENSCAPP00000010697	ENSCAPP00000004272	ENSCAPP00000010697	annotation not available	annotation not available	0.978
ENSCAPP00000004272	TRIM42	ENSCAPP00000004272	ENSCAPP00000004690	annotation not available	Tripartite motif containing 42.	0.686
ENSCAPP00000004587	TRIM42	ENSCAPP00000004587	ENSCAPP00000004690	annotation not available	Tripartite motif containing 42.	0.833
ENSCAPP00000005853	TRIM42	ENSCAPP00000005853	ENSCAPP00000004690	annotation not available	Tripartite motif containing 42.	0.708
ENSCAPP00000005909	TRIM42	ENSCAPP00000005909	ENSCAPP00000004690	annotation not available	Tripartite motif containing 42.	0.708
ENSCAPP00000006187	TRIM42	ENSCAPP00000006187	ENSCAPP00000004690	annotation not available	Tripartite motif containing 42.	0.629
ENSCAPP00000010697	ENSCAPP00000004272	ENSCAPP00000010697	ENSCAPP00000004272	annotation not available	annotation not available	0.978
ENSCAPP00000010697	TRIM42	ENSCAPP00000010697	ENSCAPP00000004690	annotation not available	Tripartite motif containing 42.	0.850
FSD2	TRIM42	ENSCAPP00000003263	ENSCAPP00000004690	Fibronectin type III and SPRY domain containing 2.	Tripartite motif containing 42.	0.623
TRIM23	TRIM42	ENSCAPP00000006893	ENSCAPP00000004690	Tripartite motif containing 23.	Tripartite motif containing 42.	0.698
TRIM23	TRIM69	ENSCAPP00000006893	ENSCAPP00000011328	Tripartite motif containing 23.	Tripartite motif containing 69.	0.555
TRIM42	ENSCAPP00000004272	ENSCAPP00000004690	ENSCAPP00000004272	Tripartite motif containing 42.	annotation not available	0.686
TRIM42	ENSCAPP00000004587	ENSCAPP00000004690	ENSCAPP00000004587	Tripartite motif containing 42.	annotation not available	0.833
TRIM42	ENSCAPP00000005853	ENSCAPP00000004690	ENSCAPP00000005853	Tripartite motif containing 42.	annotation not available	0.708
TRIM42	ENSCAPP00000005909	ENSCAPP00000004690	ENSCAPP00000005909	Tripartite motif containing 42.	annotation not available	0.708
TRIM42	ENSCAPP00000006187	ENSCAPP00000004690	ENSCAPP00000006187	Tripartite motif containing 42.	annotation not available	0.629
TRIM42	ENSCAPP00000010697	ENSCAPP00000004690	ENSCAPP00000010697	Tripartite motif containing 42.	annotation not available	0.850
TRIM42	FSD2	ENSCAPP00000004690	ENSCAPP00000003263	Tripartite motif containing 42.	Fibronectin type III and SPRY domain containing 2.	0.623
TRIM42	TRIM23	ENSCAPP00000004690	ENSCAPP00000006893	Tripartite motif containing 42.	Tripartite motif containing 23.	0.698
TRIM42	TRIM69	ENSCAPP00000004690	ENSCAPP00000011328	Tripartite motif containing 42.	Tripartite motif containing 69.	0.688