ENSCAPP00000004698 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

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Textmining

[Homology]

Score

ENSCAPP00000004698

annotation not available (261 aa)

Predicted Functional Partners:

TSHZ3

0.677

ENSCAPP00000012370

0.648

MEOX1

0.629

SRF

0.622

ENSCAPP00000015287

0.601

FOXN4

0.595

ISL1

0.587

HOXD10

0.582

WNT9B

0.573

ENSCAPP00000000270

0.562

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000000270	ENSCAPP00000004698	ENSCAPP00000000270	ENSCAPP00000004698	annotation not available	annotation not available	0.562
ENSCAPP00000000270	ENSCAPP00000015287	ENSCAPP00000000270	ENSCAPP00000015287	annotation not available	annotation not available	0.465
ENSCAPP00000000270	ISL1	ENSCAPP00000000270	ENSCAPP00000007475	annotation not available	ISL LIM homeobox 1.	0.502
ENSCAPP00000004698	ENSCAPP00000000270	ENSCAPP00000004698	ENSCAPP00000000270	annotation not available	annotation not available	0.562
ENSCAPP00000004698	ENSCAPP00000012370	ENSCAPP00000004698	ENSCAPP00000012370	annotation not available	annotation not available	0.648
ENSCAPP00000004698	ENSCAPP00000015287	ENSCAPP00000004698	ENSCAPP00000015287	annotation not available	annotation not available	0.601
ENSCAPP00000004698	FOXN4	ENSCAPP00000004698	ENSCAPP00000007833	annotation not available	Forkhead box N4.	0.595
ENSCAPP00000004698	HOXD10	ENSCAPP00000004698	ENSCAPP00000002793	annotation not available	Homeobox D10.	0.582
ENSCAPP00000004698	ISL1	ENSCAPP00000004698	ENSCAPP00000007475	annotation not available	ISL LIM homeobox 1.	0.587
ENSCAPP00000004698	MEOX1	ENSCAPP00000004698	ENSCAPP00000009664	annotation not available	Mesenchyme homeobox 1.	0.629
ENSCAPP00000004698	SRF	ENSCAPP00000004698	ENSCAPP00000004937	annotation not available	Serum response factor.	0.622
ENSCAPP00000004698	TSHZ3	ENSCAPP00000004698	ENSCAPP00000001208	annotation not available	Teashirt zinc finger homeobox 3.	0.677
ENSCAPP00000004698	WNT9B	ENSCAPP00000004698	ENSCAPP00000000223	annotation not available	Wnt family member 9B.	0.573
ENSCAPP00000012370	ENSCAPP00000004698	ENSCAPP00000012370	ENSCAPP00000004698	annotation not available	annotation not available	0.648
ENSCAPP00000012370	TSHZ3	ENSCAPP00000012370	ENSCAPP00000001208	annotation not available	Teashirt zinc finger homeobox 3.	0.989
ENSCAPP00000015287	ENSCAPP00000000270	ENSCAPP00000015287	ENSCAPP00000000270	annotation not available	annotation not available	0.465
ENSCAPP00000015287	ENSCAPP00000004698	ENSCAPP00000015287	ENSCAPP00000004698	annotation not available	annotation not available	0.601
FOXN4	ENSCAPP00000004698	ENSCAPP00000007833	ENSCAPP00000004698	Forkhead box N4.	annotation not available	0.595
FOXN4	ISL1	ENSCAPP00000007833	ENSCAPP00000007475	Forkhead box N4.	ISL LIM homeobox 1.	0.515
FOXN4	SRF	ENSCAPP00000007833	ENSCAPP00000004937	Forkhead box N4.	Serum response factor.	0.436