Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PPP1R16AProtein phosphatase 1 regulatory subunit 16A. (361 aa)    
Predicted Functional Partners:
PPP1CB
Protein phosphatase 1 catalytic subunit beta.
  
 0.938
PPP1R7
Protein phosphatase 1 regulatory subunit 7.
    
 0.856
RABGGTA
Rab geranylgeranyltransferase subunit alpha.
    
   0.820
ENSCAPP00000000802
annotation not available
  
 0.816
PPP1CA
Protein phosphatase 1 catalytic subunit alpha.
  
 0.816
TLCD3A
TLC domain containing 3A.
    
 
 0.633
TPP2
Tripeptidyl peptidase 2.
  
   0.625
MYSM1
Myb like, SWIRM and MPN domains 1.
    
 0.576
BARD1
BRCA1 associated RING domain 1.
    
  0.550
ENSCAPP00000004124
annotation not available
      
 0.549
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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