TSNAX protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

TSNAX

Translin associated factor X. (259 aa)

Predicted Functional Partners:

TSN

0.998

AGO2

0.957

DICER1

0.945

KLC3

0.939

AGO3

0.933

AGO1

0.931

AGO4

0.930

ENSCAPP00000015731

0.919

MRPL44

0.918

RPP30

0.916

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGO1	AGO2	ENSCAPP00000008559	ENSCAPP00000013010	Argonaute RISC component 1.	Argonaute RISC catalytic component 2.	0.999
AGO1	AGO3	ENSCAPP00000008559	ENSCAPP00000010319	Argonaute RISC component 1.	Argonaute RISC catalytic component 3.	0.999
AGO1	AGO4	ENSCAPP00000008559	ENSCAPP00000007473	Argonaute RISC component 1.	Argonaute RISC component 4.	0.997
AGO1	DICER1	ENSCAPP00000008559	ENSCAPP00000000132	Argonaute RISC component 1.	Dicer 1, ribonuclease III.	0.999
AGO1	ENSCAPP00000015731	ENSCAPP00000008559	ENSCAPP00000015731	Argonaute RISC component 1.	annotation not available	0.979
AGO1	MRPL44	ENSCAPP00000008559	ENSCAPP00000015539	Argonaute RISC component 1.	Mitochondrial ribosomal protein L44.	0.946
AGO1	RPP30	ENSCAPP00000008559	ENSCAPP00000000909	Argonaute RISC component 1.	Ribonuclease P/MRP subunit p30.	0.922
AGO1	TSN	ENSCAPP00000008559	ENSCAPP00000015474	Argonaute RISC component 1.	Translin.	0.934
AGO1	TSNAX	ENSCAPP00000008559	ENSCAPP00000004758	Argonaute RISC component 1.	Translin associated factor X.	0.931
AGO2	AGO1	ENSCAPP00000013010	ENSCAPP00000008559	Argonaute RISC catalytic component 2.	Argonaute RISC component 1.	0.999
AGO2	AGO3	ENSCAPP00000013010	ENSCAPP00000010319	Argonaute RISC catalytic component 2.	Argonaute RISC catalytic component 3.	0.999
AGO2	AGO4	ENSCAPP00000013010	ENSCAPP00000007473	Argonaute RISC catalytic component 2.	Argonaute RISC component 4.	0.999
AGO2	DICER1	ENSCAPP00000013010	ENSCAPP00000000132	Argonaute RISC catalytic component 2.	Dicer 1, ribonuclease III.	0.999
AGO2	ENSCAPP00000015731	ENSCAPP00000013010	ENSCAPP00000015731	Argonaute RISC catalytic component 2.	annotation not available	0.985
AGO2	MRPL44	ENSCAPP00000013010	ENSCAPP00000015539	Argonaute RISC catalytic component 2.	Mitochondrial ribosomal protein L44.	0.966
AGO2	RPP30	ENSCAPP00000013010	ENSCAPP00000000909	Argonaute RISC catalytic component 2.	Ribonuclease P/MRP subunit p30.	0.928
AGO2	TSN	ENSCAPP00000013010	ENSCAPP00000015474	Argonaute RISC catalytic component 2.	Translin.	0.962
AGO2	TSNAX	ENSCAPP00000013010	ENSCAPP00000004758	Argonaute RISC catalytic component 2.	Translin associated factor X.	0.957
AGO3	AGO1	ENSCAPP00000010319	ENSCAPP00000008559	Argonaute RISC catalytic component 3.	Argonaute RISC component 1.	0.999
AGO3	AGO2	ENSCAPP00000010319	ENSCAPP00000013010	Argonaute RISC catalytic component 3.	Argonaute RISC catalytic component 2.	0.999