Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000004766annotation not available (87 aa)    
Predicted Functional Partners:
CKAP5
Cytoskeleton associated protein 5.
    
 0.964
ENSCAPP00000006638
annotation not available
    
 
 0.962
ENSCAPP00000004294
annotation not available
    
   0.931
BTRC
Beta-transducin repeat containing E3 ubiquitin protein ligase.
    
   0.926
VAPA
VAMP associated protein A.
    
  0.888
NIF3L1
NGG1 interacting factor 3 like 1.
    
   0.876
ENSCAPP00000005423
annotation not available
    
 0.867
ENSCAPP00000013539
annotation not available
    
 0.867
VAPB
VAMP associated protein B and C.
    
  0.827
FBXW11
F-box and WD repeat domain containing 11.
    
   0.797
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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