Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PABPN1LPABPN1 like, cytoplasmic. (267 aa)    
Predicted Functional Partners:
ENSCAPP00000007557
annotation not available
   
 0.934
CNOT7
CCR4-NOT transcription complex subunit 7.
    
 0.855
BTG4
BTG anti-proliferation factor 4.
    
 0.838
CNOT3
CCR4-NOT transcription complex subunit 3.
    
  0.826
RBM22
RNA binding motif protein 22.
   
 0.814
BTG3
BTG anti-proliferation factor 3.
    
  0.807
ENSCAPP00000007441
annotation not available
    
  0.785
CNOT6
CCR4-NOT transcription complex subunit 6.
    
 0.783
EIF4E1B
Eukaryotic translation initiation factor 4E family member 1B.
    
 0.729
ENSCAPP00000015332
annotation not available
    
 0.727
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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