STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX50DExD-box helicase 50. (617 aa)    
Predicted Functional Partners:
SF3B1
Splicing factor 3b subunit 1.
   
 0.921
GTPBP4
GTP binding protein 4.
   
 0.919
WDR12
WD repeat domain 12.
   
 0.908
BOP1
BOP1 ribosomal biogenesis factor.
   
 0.905
DDX18
DEAD-box helicase 18.
  
0.897
ENSCAPP00000010582
annotation not available
   
 0.887
GNL2
G protein nucleolar 2.
  
 0.877
FTSJ3
FtsJ RNA 2'-O-methyltransferase 3.
  
 0.876
ENSCAPP00000005428
annotation not available
   
 0.874
MYBBP1A
MYB binding protein 1a.
   
 0.874
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.