ENSCAPP00000004781 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

ENSCAPP00000004781

annotation not available (59 aa)

Predicted Functional Partners:

RPS14

0.999

RPL13A

0.999

ENSCAPP00000006028

0.999

RPL14

0.999

ENSCAPP00000008538

0.999

ENSCAPP00000009223

0.999

RPL19

0.999

RSAD1

0.999

RPS7

0.999

RPS9

0.999

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000004781	ENSCAPP00000006028	ENSCAPP00000004781	ENSCAPP00000006028	annotation not available	annotation not available	0.999
ENSCAPP00000004781	ENSCAPP00000008538	ENSCAPP00000004781	ENSCAPP00000008538	annotation not available	annotation not available	0.999
ENSCAPP00000004781	ENSCAPP00000009223	ENSCAPP00000004781	ENSCAPP00000009223	annotation not available	annotation not available	0.999
ENSCAPP00000004781	RPL13A	ENSCAPP00000004781	ENSCAPP00000004820	annotation not available	Ribosomal protein L13a.	0.999
ENSCAPP00000004781	RPL14	ENSCAPP00000004781	ENSCAPP00000006191	annotation not available	Ribosomal protein L14.	0.999
ENSCAPP00000004781	RPL19	ENSCAPP00000004781	ENSCAPP00000009304	annotation not available	Ribosomal protein L19.	0.999
ENSCAPP00000004781	RPS14	ENSCAPP00000004781	ENSCAPP00000000105	annotation not available	Ribosomal protein S14.	0.999
ENSCAPP00000004781	RPS7	ENSCAPP00000004781	ENSCAPP00000011311	annotation not available	Ribosomal protein S7.	0.999
ENSCAPP00000004781	RPS9	ENSCAPP00000004781	ENSCAPP00000012452	annotation not available	Ribosomal protein S9.	0.999
ENSCAPP00000004781	RSAD1	ENSCAPP00000004781	ENSCAPP00000009793	annotation not available	Radical S-adenosyl methionine domain containing 1.	0.999
ENSCAPP00000006028	ENSCAPP00000004781	ENSCAPP00000006028	ENSCAPP00000004781	annotation not available	annotation not available	0.999
ENSCAPP00000006028	ENSCAPP00000008538	ENSCAPP00000006028	ENSCAPP00000008538	annotation not available	annotation not available	0.999
ENSCAPP00000006028	ENSCAPP00000009223	ENSCAPP00000006028	ENSCAPP00000009223	annotation not available	annotation not available	0.999
ENSCAPP00000006028	RPL13A	ENSCAPP00000006028	ENSCAPP00000004820	annotation not available	Ribosomal protein L13a.	0.999
ENSCAPP00000006028	RPL14	ENSCAPP00000006028	ENSCAPP00000006191	annotation not available	Ribosomal protein L14.	0.999
ENSCAPP00000006028	RPL19	ENSCAPP00000006028	ENSCAPP00000009304	annotation not available	Ribosomal protein L19.	0.999
ENSCAPP00000006028	RPS14	ENSCAPP00000006028	ENSCAPP00000000105	annotation not available	Ribosomal protein S14.	0.999
ENSCAPP00000006028	RPS7	ENSCAPP00000006028	ENSCAPP00000011311	annotation not available	Ribosomal protein S7.	0.999
ENSCAPP00000006028	RPS9	ENSCAPP00000006028	ENSCAPP00000012452	annotation not available	Ribosomal protein S9.	0.999
ENSCAPP00000006028	RSAD1	ENSCAPP00000006028	ENSCAPP00000009793	annotation not available	Radical S-adenosyl methionine domain containing 1.	0.998