POP1 protein (Cavia aperea) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

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[Homology]

Score

POP1

POP1 homolog, ribonuclease P/MRP subunit. (1003 aa)

Predicted Functional Partners:

RPP30

0.999

POP4

0.999

DICER1

0.998

ENSCAPP00000001916

0.998

RPP25L

0.997

TARBP2

0.997

POP5

0.997

PRKRA

0.995

ENSCAPP00000015428

0.993

ENSCAPP00000015731

0.993

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DICER1	ENSCAPP00000001916	ENSCAPP00000000132	ENSCAPP00000001916	Dicer 1, ribonuclease III.	annotation not available	0.947
DICER1	ENSCAPP00000015428	ENSCAPP00000000132	ENSCAPP00000015428	Dicer 1, ribonuclease III.	annotation not available	0.991
DICER1	ENSCAPP00000015731	ENSCAPP00000000132	ENSCAPP00000015731	Dicer 1, ribonuclease III.	annotation not available	0.996
DICER1	POP1	ENSCAPP00000000132	ENSCAPP00000004787	Dicer 1, ribonuclease III.	POP1 homolog, ribonuclease P/MRP subunit.	0.998
DICER1	POP4	ENSCAPP00000000132	ENSCAPP00000009682	Dicer 1, ribonuclease III.	POP4 homolog, ribonuclease P/MRP subunit.	0.979
DICER1	POP5	ENSCAPP00000000132	ENSCAPP00000017140	Dicer 1, ribonuclease III.	POP5 homolog, ribonuclease P/MRP subunit.	0.945
DICER1	PRKRA	ENSCAPP00000000132	ENSCAPP00000003946	Dicer 1, ribonuclease III.	Protein activator of interferon induced protein kinase EIF2AK2.	0.998
DICER1	RPP25L	ENSCAPP00000000132	ENSCAPP00000004344	Dicer 1, ribonuclease III.	Ribonuclease P/MRP subunit p25 like.	0.951
DICER1	RPP30	ENSCAPP00000000132	ENSCAPP00000000909	Dicer 1, ribonuclease III.	Ribonuclease P/MRP subunit p30.	0.976
DICER1	TARBP2	ENSCAPP00000000132	ENSCAPP00000006907	Dicer 1, ribonuclease III.	TARBP2 subunit of RISC loading complex.	0.999
ENSCAPP00000001916	DICER1	ENSCAPP00000001916	ENSCAPP00000000132	annotation not available	Dicer 1, ribonuclease III.	0.947
ENSCAPP00000001916	ENSCAPP00000015428	ENSCAPP00000001916	ENSCAPP00000015428	annotation not available	annotation not available	0.947
ENSCAPP00000001916	ENSCAPP00000015731	ENSCAPP00000001916	ENSCAPP00000015731	annotation not available	annotation not available	0.950
ENSCAPP00000001916	POP1	ENSCAPP00000001916	ENSCAPP00000004787	annotation not available	POP1 homolog, ribonuclease P/MRP subunit.	0.998
ENSCAPP00000001916	POP4	ENSCAPP00000001916	ENSCAPP00000009682	annotation not available	POP4 homolog, ribonuclease P/MRP subunit.	0.998
ENSCAPP00000001916	POP5	ENSCAPP00000001916	ENSCAPP00000017140	annotation not available	POP5 homolog, ribonuclease P/MRP subunit.	0.998
ENSCAPP00000001916	PRKRA	ENSCAPP00000001916	ENSCAPP00000003946	annotation not available	Protein activator of interferon induced protein kinase EIF2AK2.	0.947
ENSCAPP00000001916	RPP25L	ENSCAPP00000001916	ENSCAPP00000004344	annotation not available	Ribonuclease P/MRP subunit p25 like.	0.997
ENSCAPP00000001916	RPP30	ENSCAPP00000001916	ENSCAPP00000000909	annotation not available	Ribonuclease P/MRP subunit p30.	0.998
ENSCAPP00000001916	TARBP2	ENSCAPP00000001916	ENSCAPP00000006907	annotation not available	TARBP2 subunit of RISC loading complex.	0.947