Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000004795annotation not available (371 aa)    
Predicted Functional Partners:
CUL1
Cullin 1.
    
 0.985
SKP1
S-phase kinase associated protein 1.
    
 0.974
SNAI1
Snail family transcriptional repressor 1.
    
   0.883
CUL3
Cullin 3.
    
 0.787
TMEM208
Transmembrane protein 208.
      
 0.770
FBXW8
F-box and WD repeat domain containing 8.
    
 0.671
SNAI2
Snail family transcriptional repressor 2.
    
   0.663
PNKD
PNKD metallo-beta-lactamase domain containing.
      
 0.658
RBX1
Ring-box 1.
    
 0.620
FBXL13
F-box and leucine rich repeat protein 13.
     
 0.602
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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