SERPINB13 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SERPINB13

Serpin family B member 13. (376 aa)

Predicted Functional Partners:

ENSCAPP00000009702

0.958

CTSK

0.933

ENSCAPP00000009599

0.893

SERPINB6

0.841

LCP1

0.837

ENSCAPP00000006934

0.771

KAT14

0.767

ENSCAPP00000015540

0.711

ENSCAPP00000001965

0.700

ENSCAPP00000003402

0.700

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CTSK	ENSCAPP00000001965	ENSCAPP00000007496	ENSCAPP00000001965	Cathepsin K.	annotation not available	0.493
CTSK	ENSCAPP00000003402	ENSCAPP00000007496	ENSCAPP00000003402	Cathepsin K.	annotation not available	0.493
CTSK	ENSCAPP00000009599	ENSCAPP00000007496	ENSCAPP00000009599	Cathepsin K.	annotation not available	0.619
CTSK	ENSCAPP00000009702	ENSCAPP00000007496	ENSCAPP00000009702	Cathepsin K.	annotation not available	0.978
CTSK	SERPINB13	ENSCAPP00000007496	ENSCAPP00000004802	Cathepsin K.	Serpin family B member 13.	0.933
CTSK	SERPINB6	ENSCAPP00000007496	ENSCAPP00000003251	Cathepsin K.	Serpin family B member 6.	0.493
ENSCAPP00000001965	CTSK	ENSCAPP00000001965	ENSCAPP00000007496	annotation not available	Cathepsin K.	0.493
ENSCAPP00000001965	ENSCAPP00000006934	ENSCAPP00000001965	ENSCAPP00000006934	annotation not available	annotation not available	0.421
ENSCAPP00000001965	ENSCAPP00000009599	ENSCAPP00000001965	ENSCAPP00000009599	annotation not available	annotation not available	0.791
ENSCAPP00000001965	ENSCAPP00000009702	ENSCAPP00000001965	ENSCAPP00000009702	annotation not available	annotation not available	0.527
ENSCAPP00000001965	ENSCAPP00000015540	ENSCAPP00000001965	ENSCAPP00000015540	annotation not available	annotation not available	0.493
ENSCAPP00000001965	SERPINB13	ENSCAPP00000001965	ENSCAPP00000004802	annotation not available	Serpin family B member 13.	0.700
ENSCAPP00000001965	SERPINB6	ENSCAPP00000001965	ENSCAPP00000003251	annotation not available	Serpin family B member 6.	0.563
ENSCAPP00000003402	CTSK	ENSCAPP00000003402	ENSCAPP00000007496	annotation not available	Cathepsin K.	0.493
ENSCAPP00000003402	ENSCAPP00000006934	ENSCAPP00000003402	ENSCAPP00000006934	annotation not available	annotation not available	0.421
ENSCAPP00000003402	ENSCAPP00000009599	ENSCAPP00000003402	ENSCAPP00000009599	annotation not available	annotation not available	0.791
ENSCAPP00000003402	ENSCAPP00000009702	ENSCAPP00000003402	ENSCAPP00000009702	annotation not available	annotation not available	0.527
ENSCAPP00000003402	ENSCAPP00000015540	ENSCAPP00000003402	ENSCAPP00000015540	annotation not available	annotation not available	0.493
ENSCAPP00000003402	SERPINB13	ENSCAPP00000003402	ENSCAPP00000004802	annotation not available	Serpin family B member 13.	0.700
ENSCAPP00000003402	SERPINB6	ENSCAPP00000003402	ENSCAPP00000003251	annotation not available	Serpin family B member 6.	0.563