STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC22BSEC22 homolog B, vesicle trafficking protein (gene/pseudogene). (135 aa)    
Predicted Functional Partners:
STX5
Syntaxin 5.
   
 0.998
ENSCAPP00000010370
annotation not available
    
 0.997
VTI1A
Vesicle transport through interaction with t-SNAREs 1A.
   
 0.993
ENSCAPP00000003732
annotation not available
   
 0.993
STX6
Syntaxin 6.
    
 0.993
GOSR1
Golgi SNAP receptor complex member 1.
    
 0.993
STX18
Syntaxin 18.
   
 0.993
USE1
Unconventional SNARE in the ER 1.
    
 0.990
VTI1B
Vesicle transport through interaction with t-SNAREs 1B.
    
 0.987
ENSCAPP00000003668
annotation not available
   
 0.985
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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