Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
JMJD6Jumonji domain containing 6, arginine demethylase and lysine hydroxylase. (360 aa)    
Predicted Functional Partners:
U2AF2
U2 small nuclear RNA auxiliary factor 2.
    
 0.976
ENSCAPP00000000022
annotation not available
    
 
 0.944
ENSCAPP00000010473
annotation not available
    
 
 0.944
ENSCAPP00000001550
annotation not available
    
 0.935
PRPF40A
pre-mRNA processing factor 40 homolog A.
    
   0.923
ENSCAPP00000011676
annotation not available
    
 
 0.896
ENSCAPP00000013974
annotation not available
   
 
 0.848
ENSCAPP00000008149
annotation not available
   
 
 0.844
CPSF6
Cleavage and polyadenylation specific factor 6.
    
 
 0.841
NUDT21
Nudix hydrolase 21.
    
   0.833
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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