STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JMJD6Jumonji domain containing 6, arginine demethylase and lysine hydroxylase. (360 aa)    
Predicted Functional Partners:
ENSCAPP00000000022
annotation not available
    
 
 0.925
ENSCAPP00000010473
annotation not available
    
 
 0.925
ENSCAPP00000001550
annotation not available
    
 0.760
BRD2
Bromodomain containing 2.
    
 
 0.654
BRD3
Bromodomain containing 3.
    
 
 0.614
BRDT
Bromodomain testis associated.
    
 
 0.610
U2AF2
U2 small nuclear RNA auxiliary factor 2.
    
 
 0.605
ENSCAPP00000005081
annotation not available
    
 0.603
ENSCAPP00000005146
annotation not available
    
 0.603
ENSCAPP00000010208
annotation not available
    
 0.603
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.