PAIP2B protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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Experiments

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[Homology]

Score

PAIP2B

poly(A) binding protein interacting protein 2B. (132 aa)

Predicted Functional Partners:

ENSCAPP00000009173

0.844

ENSCAPP00000016629

0.555

RC3H1

0.544

LARP4

0.534

ENSCAPP00000001879

0.504

ENSCAPP00000007026

0.504

ENSCAPP00000010143

0.504

PABPC1L

0.459

ENSCAPP00000006012

0.443

ENSCAPP00000007298

0.428

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000001879	ENSCAPP00000007298	ENSCAPP00000001879	ENSCAPP00000007298	annotation not available	annotation not available	0.439
ENSCAPP00000001879	ENSCAPP00000009173	ENSCAPP00000001879	ENSCAPP00000009173	annotation not available	annotation not available	0.603
ENSCAPP00000001879	ENSCAPP00000016629	ENSCAPP00000001879	ENSCAPP00000016629	annotation not available	annotation not available	0.706
ENSCAPP00000001879	PABPC1L	ENSCAPP00000001879	ENSCAPP00000014040	annotation not available	poly(A) binding protein cytoplasmic 1 like.	0.902
ENSCAPP00000001879	PAIP2B	ENSCAPP00000001879	ENSCAPP00000004832	annotation not available	poly(A) binding protein interacting protein 2B.	0.504
ENSCAPP00000006012	PAIP2B	ENSCAPP00000006012	ENSCAPP00000004832	annotation not available	poly(A) binding protein interacting protein 2B.	0.443
ENSCAPP00000007026	ENSCAPP00000007298	ENSCAPP00000007026	ENSCAPP00000007298	annotation not available	annotation not available	0.439
ENSCAPP00000007026	ENSCAPP00000009173	ENSCAPP00000007026	ENSCAPP00000009173	annotation not available	annotation not available	0.603
ENSCAPP00000007026	ENSCAPP00000016629	ENSCAPP00000007026	ENSCAPP00000016629	annotation not available	annotation not available	0.706
ENSCAPP00000007026	PABPC1L	ENSCAPP00000007026	ENSCAPP00000014040	annotation not available	poly(A) binding protein cytoplasmic 1 like.	0.902
ENSCAPP00000007026	PAIP2B	ENSCAPP00000007026	ENSCAPP00000004832	annotation not available	poly(A) binding protein interacting protein 2B.	0.504
ENSCAPP00000007298	ENSCAPP00000001879	ENSCAPP00000007298	ENSCAPP00000001879	annotation not available	annotation not available	0.439
ENSCAPP00000007298	ENSCAPP00000007026	ENSCAPP00000007298	ENSCAPP00000007026	annotation not available	annotation not available	0.439
ENSCAPP00000007298	ENSCAPP00000010143	ENSCAPP00000007298	ENSCAPP00000010143	annotation not available	annotation not available	0.439
ENSCAPP00000007298	ENSCAPP00000016629	ENSCAPP00000007298	ENSCAPP00000016629	annotation not available	annotation not available	0.902
ENSCAPP00000007298	PABPC1L	ENSCAPP00000007298	ENSCAPP00000014040	annotation not available	poly(A) binding protein cytoplasmic 1 like.	0.791
ENSCAPP00000007298	PAIP2B	ENSCAPP00000007298	ENSCAPP00000004832	annotation not available	poly(A) binding protein interacting protein 2B.	0.428
ENSCAPP00000007298	RC3H1	ENSCAPP00000007298	ENSCAPP00000003408	annotation not available	Ring finger and CCCH-type domains 1.	0.623
ENSCAPP00000009173	ENSCAPP00000001879	ENSCAPP00000009173	ENSCAPP00000001879	annotation not available	annotation not available	0.603
ENSCAPP00000009173	ENSCAPP00000007026	ENSCAPP00000009173	ENSCAPP00000007026	annotation not available	annotation not available	0.603