Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ASIC3Acid sensing ion channel subunit 3. (532 aa)    
Predicted Functional Partners:
ASIC4
Acid sensing ion channel subunit family member 4.
     
 0.900
ASIC5
Acid sensing ion channel subunit family member 5.
    
 0.886
ASIC1
Acid sensing ion channel subunit 1.
    
 0.872
STOM
Stomatin.
    
 0.826
TXK
TXK tyrosine kinase.
     
 0.813
DLG4
Discs large MAGUK scaffold protein 4.
    
 
 0.804
STOML3
Stomatin like 3.
    
 0.723
STOML1
Stomatin like 1.
    
 0.675
NGF
Nerve growth factor.
      
 0.665
TRPV1
Transient receptor potential cation channel subfamily V member 1.
      
 0.659
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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